| Title | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | ||
| Author | Liggett, Stephen B; Bochkov, Yury A; Pappas, Tressa; Lemanske, Robert F Jr; Gern, James E; Sengamalay, Naomi; Zhao, Xuechu; Su, Qi; Fraser, Claire M; Palmenberg, Ann C | ||
| Journal | Genome Announc | Publication Year/Month | 2014-Mar |
| PMID | 24675858 | PMCID | PMC3968336 |
| Affiliation | 1.Department of Medicine, University of South Florida, Morsani College of Medicine, Tampa, Florida, USA. | ||
Human rhinovirus (RV) isolates from the RV-C species are recently discovered infectious agents that are closely linked to asthma and wheezing etiologies in infants. Clinical study samples collected at the University of Wisconsin-Madison describe 41 nearly complete genome sequences representing 21 RV-C genotypes.
| StrainID | RV Species | Serotype | Length(nt) | Country | Year | Strain Name |
|---|---|---|---|---|---|---|
| CNC04614 | C | 42 | 6807 | USA | 1999 | HRV-C42_p1053_s3040_1999 |
| CNC04619 | C | 17 | 6757 | USA | 2009 | HRV-C17_p1192_sR2967_2009 |
| CNC04734 | C | 2 | 6494 | USA | 1999 | HRV-C02_p1278_s6331_1999 |
| CNC04754 | C | 15 | 7001 | USA | 1999 | HRV-C15_p1259_s2935_1999 |
| CNC04759 | C | 43 | 6734 | USA | 1999 | HRV-C43_p1281_s6410_1999 |
| CNC04764 | C | 32 | 6962 | USA | 2008 | HRV-C32_p1167_sR2910_2008 |
| CNC04769 | C | 49 | 6801 | USA | 2000 | HRV-C49_p1277_s6237_2000 |
| CNM04615 | C | 32 | 6735 | USA | 2007 | HRV-C32_p1086_sR458_2007 |
| CNM04725 | C | 8 | 6272 | USA | 2008 | HRV-C08_p1192_sR2962_2008 |
| CNM04735 | C | 6 | 7092 | USA | 2009 | HRV-C06_p1031_sR2724_2009 |
| CNM04755 | C | 43 | 6535 | USA | 2000 | HRV-C43_p1075_s3911_2000 |
| CNM04760 | C | 2 | 6466 | USA | 2000 | HRV-C02_p1262_s3454_2000 |
| CNM04765 | C | 7 | 6423 | USA | 2010 | HRV-C07_p1028_sR3259_2010 |
| CNM04770 | C | 41 | 6671 | USA | 2000 | HRV-C41_p1078_s2536_2000 |
| CNP04612 | C | 2 | 6584 | USA | 2000 | HRV-C02_p1104_s2978_2000 |
| CNP04727 | C | 8 | 6459 | USA | 2009 | HRV-C08_p1211_sR3055_2009 |
| CNP04752 | C | 38 | 6203 | USA | 2009 | HRV-C05_p1195_sR2110_2009 |
| CNP04757 | C | 25 | 6689 | USA | 1999 | HRV-C25_p1013_s2893_1999 |
| CNP04762 | C | 17 | 6911 | USA | 2008 | HRV-C17_p1196_sR3009_2008 |
| CNP04767 | C | 49 | 6416 | USA | 2000 | HRV-C49_p1082_s6463_2000 |
| CNP04792 | C | 22 | 6883 | USA | 1999 | HRV-C22_p1268_s3839_1999 |
| CNP04942 | C | 40 | 6662 | USA | HRV-C40_p033_s2870_1999 | |
| CNS04613 | C | 7 | 6432 | USA | 2009 | HRV-C07_p1008_sR2525_2009 |
| CNS04728 | C | 40 | 6832 | USA | 1999 | HRV-C40_p1009_s3787_1999 |
| CNS04753 | C | 7 | 6948 | USA | 2009 | HRV-C07_p1064_sR982_2009_g1 |
| CNS04758 | C | 40 | 6613 | USA | 2009 | HRV-C40_p1221_sR1448_2009 |
| CNS04763 | C | 17 | 6794 | USA | 2009 | HRV-C17_p1210_sR2132_2009 |
| CNS04768 | C | 3 | 6717 | USA | 1999 | HRV-C03_p1280_s6359_1999 |
| CNS04793 | C | 36 | 6950 | USA | 2008 | HRV-C36_p1093_sR548_2008 |
| CNS04798 | C | 49 | 6652 | USA | 2008 | HRV-C49_p1102_sR889_2008 |
| CNZ04606 | C | 26 | 6632 | USA | 2000 | HRV-C26_p1052_s3034_2000 |
| CNZ04611 | C | 43 | 6934 | USA | 2009 | HRV-C43_p1154_sR1124_2009 |
| CNZ04616 | C | 7 | 6215 | USA | 2010 | HRV-C07_p1028_sR3258_2010 |
| CNZ04726 | C | 2 | 7150 | USA | 1999 | HRV-C02_p1264_s3775_1999 |
| CNZ04736 | C | 3 | 6597 | USA | 2009 | HRV-C03_p1139_sR1051_2009 |
| CNZ04751 | C | 2 | 6675 | USA | 2009 | HRV-C02_p1163_sR2897_2009_g1 |
| CNZ04756 | C | 45 | 7087 | USA | 2000 | HRV-C45_p1084_s3920_2000 |
| CNZ04761 | C | 6 | 6528 | USA | 1999 | HRV-C06_p1264_s3778_1999 |
| CNZ04766 | C | 28 | 6692 | USA | 2000 | HRV-C28_p1269_s3885_2000 |
| CNZ04771 | C | 7 | 6503 | USA | 2009 | HRV-C07_p1008_sR2528_2009 |
| CNZ04941 | C | 4 | 6256 | USA | 2008 | HRV-C04_p1094_sR557_2008 |