| RVdb StrainID | CNM04770 | GenBank Accession | JN798565.1 |
| Species | RVC | Sequence Length | 6671 nt |
| Serotype | 41 Checked by RVdb | Serotype (GenBank) | 41 |
| Definition | Human rhinovirus C strain HRV-C41_p1078_s2536_2000 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C41_p1078_s2536_2000 | Sampling Date | 2000-10-02 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC007917 | 1A (VP4) | 513 | 713 | 0 | 0 | 201 | |
| SQC007918 | 1B (VP2) | 714 | 1508 | 0 | 0 | 795 | |
| SQC007919 | 1C (VP3) | 1509 | 2213 | 0 | 0 | 705 | |
| SQC007920 | 1D (VP1) | 2214 | 3035 | 0 | 0 | 822 | |
| SQC007921 | 2A (P2-A) | 3036 | 3461 | 0 | 0 | 426 | |
| SQC007922 | 2B (P2-B) | 3462 | 3758 | 0 | 0 | 297 | |
| SQC007923 | 2C (P2-C) | 3759 | 4736 | 0 | 0 | 978 | |
| SQC007924 | 3A (P3-A) | 4737 | 4961 | 0 | 0 | 225 | |
| SQC007925 | 3B (VPg) | 4962 | 5027 | 0 | 0 | 66 | |
| SQC007926 | 3D | 5577 | 0 | 0 | 1 | 1095 | |
| SQC007927 | 5'UTR | 0 | 512 | 1 | 0 | 512 | |
| SQC007928 | CDS | 513 | 0 | 0 | 1 | 6159 | |
| SQC007929 | protease 3C | 5028 | 5576 | 0 | 0 | 549 | |
| SQC007930 | VP4/2 | 513 | 943 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002454 | CDS | 1 | 2053 | 0 | 0 | 2053 | |
| SPC002455 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002456 | 3D | 1689 | 2053 | 0 | 1 | 365 | |
| SPC002457 | 2C (P2-C) | 1083 | 1408 | 0 | 0 | 326 | |
| SPC002458 | 1D (VP1) | 568 | 841 | 0 | 0 | 274 | |
| SPC002459 | 1B (VP2) | 68 | 332 | 0 | 0 | 265 | |
| SPC002460 | 1C (VP3) | 333 | 567 | 0 | 0 | 235 | |
| SPC002461 | protease 3C | 1506 | 1688 | 0 | 0 | 183 | |
| SPC002462 | 2A (P2-A) | 842 | 983 | 0 | 0 | 142 | |
| SPC002463 | 2B (P2-B) | 984 | 1082 | 0 | 0 | 99 | |
| SPC002464 | 3A (P3-A) | 1409 | 1483 | 0 | 0 | 75 | |
| SPC002465 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002466 | 3B (VPg) | 1484 | 1505 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |