| RVdb StrainID | CNS04798 | GenBank Accession | JF907574.1 |
| Species | RVC | Sequence Length | 6652 nt |
| Serotype | 49 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Human rhinovirus C strain HRV-C49_p1102_sR889_2008 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C49_p1102_sR889_2008 | Sampling Date | 2008-09-27 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina HiSeq 2000 | Assembly Method | Velvet v. 1.0.13 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC016897 | 1A (VP4) | 175 | 375 | 0 | 0 | 201 | |
| SQC016898 | 1B (VP2) | 376 | 1158 | 0 | 0 | 783 | |
| SQC016899 | 1C (VP3) | 1159 | 1863 | 0 | 0 | 705 | |
| SQC016900 | 1D (VP1) | 1864 | 2685 | 0 | 0 | 822 | |
| SQC016901 | 2A (P2-A) | 2686 | 3111 | 0 | 0 | 426 | |
| SQC016902 | 2B (P2-B) | 3112 | 3408 | 0 | 0 | 297 | |
| SQC016903 | 2C (P2-C) | 3409 | 4386 | 0 | 0 | 978 | |
| SQC016904 | 3'UTR | 6610 | 0 | 0 | 1 | 43 | |
| SQC016905 | 3A (P3-A) | 4387 | 4611 | 0 | 0 | 225 | |
| SQC016906 | 3B (VPg) | 4612 | 4677 | 0 | 0 | 66 | |
| SQC016907 | 3D | 5227 | 6606 | 0 | 0 | 1380 | |
| SQC016908 | CDS | 175 | 6609 | 0 | 0 | 6435 | |
| SQC016909 | protease 3C | 4678 | 5226 | 0 | 0 | 549 | |
| SQC016910 | VP4/2 | 175 | 605 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002116 | CDS | 1 | 2144 | 0 | 0 | 2144 | |
| SPC002117 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002118 | 3D | 1685 | 2144 | 0 | 0 | 460 | |
| SPC002119 | 2C (P2-C) | 1079 | 1404 | 0 | 0 | 326 | |
| SPC002120 | 1D (VP1) | 564 | 837 | 0 | 0 | 274 | |
| SPC002121 | 1B (VP2) | 68 | 328 | 0 | 0 | 261 | |
| SPC002122 | 1C (VP3) | 329 | 563 | 0 | 0 | 235 | |
| SPC002123 | protease 3C | 1502 | 1684 | 0 | 0 | 183 | |
| SPC002124 | 2A (P2-A) | 838 | 979 | 0 | 0 | 142 | |
| SPC002125 | 2B (P2-B) | 980 | 1078 | 0 | 0 | 99 | |
| SPC002126 | 3A (P3-A) | 1405 | 1479 | 0 | 0 | 75 | |
| SPC002127 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002128 | 3B (VPg) | 1480 | 1501 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |