| RVdb StrainID | CNP04767 | GenBank Accession | JN798568.1 |
| Species | RVC | Sequence Length | 6416 nt |
| Serotype | 49 Checked by RVdb | Serotype (GenBank) | 49 |
| Definition | Human rhinovirus C strain HRV-C49_p1082_s6463_2000 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C49_p1082_s6463_2000 | Sampling Date | 2000-03-14 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC012401 | 1A (VP4) | 198 | 398 | 0 | 0 | 201 | |
| SQC012402 | 1B (VP2) | 399 | 0 | 0 | 1 | 738 | |
| SQC012403 | 1C (VP3) | 0 | 1886 | 1 | 0 | 387 | |
| SQC012404 | 1D (VP1) | 1887 | 2708 | 0 | 0 | 822 | |
| SQC012405 | 2A (P2-A) | 2709 | 3134 | 0 | 0 | 426 | |
| SQC012406 | 2B (P2-B) | 3135 | 3431 | 0 | 0 | 297 | |
| SQC012407 | 2C (P2-C) | 3432 | 4409 | 0 | 0 | 978 | |
| SQC012408 | 3A (P3-A) | 4410 | 4634 | 0 | 0 | 225 | |
| SQC012409 | 3B (VPg) | 4635 | 4700 | 0 | 0 | 66 | |
| SQC012410 | 3D | 5250 | 0 | 0 | 1 | 1167 | |
| SQC012411 | CDS | 198 | 0 | 0 | 1 | 6219 | |
| SQC012412 | protease 3C | 4701 | 5249 | 0 | 0 | 549 | |
| SQC012413 | VP4/2 | 198 | 628 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002493 | CDS | 1 | 2073 | 0 | 0 | 2073 | |
| SPC002494 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002495 | 3D | 1685 | 2073 | 0 | 1 | 389 | |
| SPC002496 | 2C (P2-C) | 1079 | 1404 | 0 | 0 | 326 | |
| SPC002497 | 1D (VP1) | 564 | 837 | 0 | 0 | 274 | |
| SPC002498 | 1B (VP2) | 68 | 313 | 0 | 1 | 246 | |
| SPC002499 | protease 3C | 1502 | 1684 | 0 | 0 | 183 | |
| SPC002500 | 2A (P2-A) | 838 | 979 | 0 | 0 | 142 | |
| SPC002501 | 1C (VP3) | 435 | 563 | 1 | 0 | 129 | |
| SPC002502 | 2B (P2-B) | 980 | 1078 | 0 | 0 | 99 | |
| SPC002503 | 3A (P3-A) | 1405 | 1479 | 0 | 0 | 75 | |
| SPC002504 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002505 | 3B (VPg) | 1480 | 1501 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |