| RVdb StrainID | CNS04758 | GenBank Accession | JN815251.1 |
| Species | RVC | Sequence Length | 6613 nt |
| Serotype | 40 Checked by RVdb | Serotype (GenBank) | 40 |
| Definition | Human rhinovirus C strain HRV-C40_p1221_sR1448_2009 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C40_p1221_sR1448_2009 | Sampling Date | 2009-04-09 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC016831 | 1A (VP4) | 387 | 587 | 0 | 0 | 201 | |
| SQC016832 | 1B (VP2) | 588 | 1373 | 0 | 0 | 786 | |
| SQC016833 | 1C (VP3) | 1374 | 2084 | 0 | 0 | 711 | |
| SQC016834 | 1D (VP1) | 2085 | 2897 | 0 | 0 | 813 | |
| SQC016835 | 2A (P2-A) | 2898 | 3323 | 0 | 0 | 426 | |
| SQC016836 | 2B (P2-B) | 3324 | 3617 | 0 | 0 | 294 | |
| SQC016837 | 2C (P2-C) | 3618 | 4598 | 0 | 0 | 981 | |
| SQC016838 | 3A (P3-A) | 4599 | 4823 | 0 | 0 | 225 | |
| SQC016839 | 3B (VPg) | 4824 | 4889 | 0 | 0 | 66 | |
| SQC016840 | 3D | 5439 | 0 | 0 | 1 | 1175 | |
| SQC016841 | CDS | 387 | 0 | 0 | 1 | 6227 | |
| SQC016842 | protease 3C | 4890 | 5438 | 0 | 0 | 549 | |
| SQC016843 | VP4/2 | 387 | 817 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002699 | CDS | 1 | 2075 | 0 | 0 | 2075 | |
| SPC002700 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002701 | 3D | 1685 | 2075 | 0 | 1 | 391 | |
| SPC002702 | 2C (P2-C) | 1078 | 1404 | 0 | 0 | 327 | |
| SPC002703 | 1D (VP1) | 567 | 837 | 0 | 0 | 271 | |
| SPC002704 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC002705 | 1C (VP3) | 330 | 566 | 0 | 0 | 237 | |
| SPC002706 | protease 3C | 1502 | 1684 | 0 | 0 | 183 | |
| SPC002707 | 2A (P2-A) | 838 | 979 | 0 | 0 | 142 | |
| SPC002708 | 2B (P2-B) | 980 | 1077 | 0 | 0 | 98 | |
| SPC002709 | 3A (P3-A) | 1405 | 1479 | 0 | 0 | 75 | |
| SPC002710 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002711 | 3B (VPg) | 1480 | 1501 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |