RVdb-Rhinovirus Database

MSA & Tree building

Multiple sequence alignment (MSA) and ML phylogenetic tree construction, allowing users to paste fasta sequences for multiple sequence alignment and ML phylogenetic tree construction.RVdb also supports users to visualize and beautify the above results online. Multiple sequence alignment is supported by MAFFT,the trimming of aligned sequences is supported by trimAl, and ML phylogenetic tree construction is supported by IQ-TREE 2.

Enter your input sequences (fasta format)

Important note: This function can align up to 100 sequences. Please ensure the uniqueness of the description line (defline) or header/identifier line of the pasted sequence!

Import Example

Sequence Type DNA/RNA Protein

Function Selection Multiple Sequence Alignment ML Phylogenetic Tree Construction