| RVdb StrainID | CNZ04941 | GenBank Accession | JF781509.1 |
| Species | RVC | Sequence Length | 6256 nt |
| Serotype | 4 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Human rhinovirus C strain HRV-C04_p1094_sR557_2008 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C04_p1094_sR557_2008 | Sampling Date | 2008-05-04 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina HiSeq 2000 | Assembly Method | Velvet v. 1.0.13 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC021562 | 1A (VP4) | 72 | 272 | 0 | 0 | 201 | |
| SQC021563 | 1B (VP2) | 273 | 1055 | 0 | 0 | 783 | |
| SQC021564 | 1C (VP3) | 1056 | 1760 | 0 | 0 | 705 | |
| SQC021565 | 1D (VP1) | 1761 | 2582 | 0 | 0 | 822 | |
| SQC021566 | 2A (P2-A) | 2583 | 3008 | 0 | 0 | 426 | |
| SQC021567 | 2B (P2-B) | 3009 | 3305 | 0 | 0 | 297 | |
| SQC021568 | 2C (P2-C) | 3306 | 4283 | 0 | 0 | 978 | |
| SQC021569 | 3A (P3-A) | 4284 | 4508 | 0 | 0 | 225 | |
| SQC021570 | 3B (VPg) | 4509 | 4574 | 0 | 0 | 66 | |
| SQC021571 | 3D | 5124 | 0 | 0 | 1 | 1133 | |
| SQC021572 | CDS | 72 | 0 | 0 | 1 | 6185 | |
| SQC021573 | protease 3C | 4575 | 5123 | 0 | 0 | 549 | |
| SQC021574 | VP4/2 | 72 | 502 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002145 | CDS | 1 | 2062 | 0 | 0 | 2062 | |
| SPC002146 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002147 | 3D | 1685 | 2062 | 0 | 1 | 378 | |
| SPC002148 | 2C (P2-C) | 1079 | 1404 | 0 | 0 | 326 | |
| SPC002149 | 1D (VP1) | 564 | 837 | 0 | 0 | 274 | |
| SPC002150 | 1B (VP2) | 68 | 328 | 0 | 0 | 261 | |
| SPC002151 | 1C (VP3) | 329 | 563 | 0 | 0 | 235 | |
| SPC002152 | protease 3C | 1502 | 1684 | 0 | 0 | 183 | |
| SPC002153 | 2A (P2-A) | 838 | 979 | 0 | 0 | 142 | |
| SPC002154 | 2B (P2-B) | 980 | 1078 | 0 | 0 | 99 | |
| SPC002155 | 3A (P3-A) | 1405 | 1479 | 0 | 0 | 75 | |
| SPC002156 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002157 | 3B (VPg) | 1480 | 1501 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |