| RVdb StrainID | CNS04793 | GenBank Accession | JN541267.1 |
| Species | RVC | Sequence Length | 6950 nt |
| Serotype | 36 Checked by RVdb | Serotype (GenBank) | 36 |
| Definition | Human rhinovirus C strain HRV-C36_p1093_sR548_2008 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C36_p1093_sR548_2008 | Sampling Date | 2008-12-04 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC016883 | 1A (VP4) | 530 | 730 | 0 | 0 | 201 | |
| SQC016884 | 1B (VP2) | 731 | 1516 | 0 | 0 | 786 | |
| SQC016885 | 1C (VP3) | 1517 | 2224 | 0 | 0 | 708 | |
| SQC016886 | 1D (VP1) | 2225 | 3040 | 0 | 0 | 816 | |
| SQC016887 | 2A (P2-A) | 3041 | 3466 | 0 | 0 | 426 | |
| SQC016888 | 2B (P2-B) | 3467 | 3763 | 0 | 0 | 297 | |
| SQC016889 | 2C (P2-C) | 3764 | 4741 | 0 | 0 | 978 | |
| SQC016890 | 3A (P3-A) | 4742 | 4966 | 0 | 0 | 225 | |
| SQC016891 | 3B (VPg) | 4967 | 5032 | 0 | 0 | 66 | |
| SQC016892 | 3D | 5582 | 0 | 0 | 1 | 1369 | |
| SQC016893 | 5'UTR | 0 | 529 | 1 | 0 | 529 | |
| SQC016894 | CDS | 530 | 0 | 0 | 1 | 6421 | |
| SQC016895 | protease 3C | 5033 | 5581 | 0 | 0 | 549 | |
| SQC016896 | VP4/2 | 530 | 959 | 0 | 0 | 430 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002410 | CDS | 1 | 2140 | 0 | 0 | 2140 | |
| SPC002411 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002412 | 3D | 1685 | 2140 | 0 | 1 | 456 | |
| SPC002413 | 2C (P2-C) | 1079 | 1404 | 0 | 0 | 326 | |
| SPC002414 | 1D (VP1) | 566 | 837 | 0 | 0 | 272 | |
| SPC002415 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC002416 | 1C (VP3) | 330 | 565 | 0 | 0 | 236 | |
| SPC002417 | protease 3C | 1502 | 1684 | 0 | 0 | 183 | |
| SPC002418 | 2A (P2-A) | 838 | 979 | 0 | 0 | 142 | |
| SPC002419 | 2B (P2-B) | 980 | 1078 | 0 | 0 | 99 | |
| SPC002420 | 3A (P3-A) | 1405 | 1479 | 0 | 0 | 75 | |
| SPC002421 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002422 | 3B (VPg) | 1480 | 1501 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |