| RVdb StrainID | CNZ04766 | GenBank Accession | JN798569.1 |
| Species | RVC | Sequence Length | 6692 nt |
| Serotype | 28 Checked by RVdb | Serotype (GenBank) | 28 |
| Definition | Human rhinovirus C strain HRV-C28_p1269_s3885_2000 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-04 |
| Strain Name | HRV-C28_p1269_s3885_2000 | Sampling Date | 2000-03-08 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC021438 | 1A (VP4) | 259 | 459 | 0 | 0 | 201 | |
| SQC021439 | 1B (VP2) | 460 | 1245 | 0 | 0 | 786 | |
| SQC021440 | 1C (VP3) | 1246 | 1950 | 0 | 0 | 705 | |
| SQC021441 | 1D (VP1) | 1951 | 2784 | 0 | 0 | 834 | |
| SQC021442 | 2A (P2-A) | 2785 | 3210 | 0 | 0 | 426 | |
| SQC021443 | 2B (P2-B) | 3211 | 3507 | 0 | 0 | 297 | |
| SQC021444 | 2C (P2-C) | 3508 | 4485 | 0 | 0 | 978 | |
| SQC021445 | 3A (P3-A) | 4486 | 4710 | 0 | 0 | 225 | |
| SQC021446 | 3B (VPg) | 4711 | 4776 | 0 | 0 | 66 | |
| SQC021447 | 3D | 5326 | 0 | 0 | 1 | 1367 | |
| SQC021448 | CDS | 259 | 0 | 0 | 1 | 6434 | |
| SQC021449 | protease 3C | 4777 | 5325 | 0 | 0 | 549 | |
| SQC021450 | VP4/2 | 259 | 693 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002506 | CDS | 1 | 2145 | 0 | 0 | 2145 | |
| SPC002507 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002508 | 3D | 1690 | 2145 | 0 | 1 | 456 | |
| SPC002509 | 2C (P2-C) | 1084 | 1409 | 0 | 0 | 326 | |
| SPC002510 | 1D (VP1) | 565 | 842 | 0 | 0 | 278 | |
| SPC002511 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC002512 | 1C (VP3) | 330 | 564 | 0 | 0 | 235 | |
| SPC002513 | protease 3C | 1507 | 1689 | 0 | 0 | 183 | |
| SPC002514 | 2A (P2-A) | 843 | 984 | 0 | 0 | 142 | |
| SPC002515 | 2B (P2-B) | 985 | 1083 | 0 | 0 | 99 | |
| SPC002516 | 3A (P3-A) | 1410 | 1484 | 0 | 0 | 75 | |
| SPC002517 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002518 | 3B (VPg) | 1485 | 1506 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |