| RVdb StrainID | CNC04734 | GenBank Accession | JN990703.1 |
| Species | RVC | Sequence Length | 6494 nt |
| Serotype | 2 Checked by RVdb | Serotype (GenBank) | 2 |
| Definition | Human rhinovirus C strain HRV-C02_p1278_s6331_1999 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C02_p1278_s6331_1999 | Sampling Date | 1999 |
| Sampling Country | USA | Sampling location | -N/A- |
| Isolation Source | -N/A- | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC003363 | 1A (VP4) | 207 | 407 | 0 | 0 | 201 | |
| SQC003364 | 1B (VP2) | 408 | 1193 | 0 | 0 | 786 | |
| SQC003365 | 1C (VP3) | 1194 | 1904 | 0 | 0 | 711 | |
| SQC003366 | 1D (VP1) | 1905 | 2717 | 0 | 0 | 813 | |
| SQC003367 | 2A (P2-A) | 2718 | 3143 | 0 | 0 | 426 | |
| SQC003368 | 2B (P2-B) | 3144 | 3437 | 0 | 0 | 294 | |
| SQC003369 | 2C (P2-C) | 3438 | 4427 | 0 | 0 | 990 | |
| SQC003370 | 3A (P3-A) | 4428 | 4652 | 0 | 0 | 225 | |
| SQC003371 | 3B (VPg) | 4653 | 4718 | 0 | 0 | 66 | |
| SQC003372 | 3D | 5268 | 0 | 0 | 1 | 1227 | |
| SQC003373 | CDS | 207 | 0 | 0 | 1 | 6288 | |
| SQC003374 | protease 3C | 4719 | 5267 | 0 | 0 | 549 | |
| SQC003375 | VP4/2 | 207 | 637 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002738 | CDS | 1 | 2096 | 0 | 0 | 2096 | |
| SPC002739 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002740 | 3D | 1688 | 2096 | 0 | 1 | 409 | |
| SPC002741 | 2C (P2-C) | 1078 | 1407 | 0 | 0 | 330 | |
| SPC002742 | 1D (VP1) | 567 | 837 | 0 | 0 | 271 | |
| SPC002743 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC002744 | 1C (VP3) | 330 | 566 | 0 | 0 | 237 | |
| SPC002745 | protease 3C | 1505 | 1687 | 0 | 0 | 183 | |
| SPC002746 | 2A (P2-A) | 838 | 979 | 0 | 0 | 142 | |
| SPC002747 | 2B (P2-B) | 980 | 1077 | 0 | 0 | 98 | |
| SPC002748 | 3A (P3-A) | 1408 | 1482 | 0 | 0 | 75 | |
| SPC002749 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002750 | 3B (VPg) | 1483 | 1504 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |