| RVdb StrainID | CNM04760 | GenBank Accession | JN815248.1 |
| Species | RVC | Sequence Length | 6466 nt |
| Serotype | 2 Checked by RVdb | Serotype (GenBank) | 2 |
| Definition | Human rhinovirus C strain HRV-C02_p1262_s3454_2000 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C02_p1262_s3454_2000 | Sampling Date | 2000-09-16 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC007891 | 1A (VP4) | 199 | 399 | 0 | 0 | 201 | |
| SQC007892 | 1B (VP2) | 400 | 1185 | 0 | 0 | 786 | |
| SQC007893 | 1C (VP3) | 1186 | 1896 | 0 | 0 | 711 | |
| SQC007894 | 1D (VP1) | 1897 | 2709 | 0 | 0 | 813 | |
| SQC007895 | 2A (P2-A) | 2710 | 3135 | 0 | 0 | 426 | |
| SQC007896 | 2B (P2-B) | 3136 | 3429 | 0 | 0 | 294 | |
| SQC007897 | 2C (P2-C) | 3430 | 4410 | 0 | 0 | 981 | |
| SQC007898 | 3A (P3-A) | 4411 | 4635 | 0 | 0 | 225 | |
| SQC007899 | 3B (VPg) | 4636 | 4701 | 0 | 0 | 66 | |
| SQC007900 | 3D | 5251 | 0 | 0 | 1 | 1216 | |
| SQC007901 | CDS | 199 | 0 | 0 | 1 | 6268 | |
| SQC007902 | protease 3C | 4702 | 5250 | 0 | 0 | 549 | |
| SQC007903 | VP4/2 | 199 | 629 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002673 | CDS | 1 | 2089 | 0 | 0 | 2089 | |
| SPC002674 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002675 | 3D | 1685 | 2089 | 0 | 1 | 405 | |
| SPC002676 | 2C (P2-C) | 1078 | 1404 | 0 | 0 | 327 | |
| SPC002677 | 1D (VP1) | 567 | 837 | 0 | 0 | 271 | |
| SPC002678 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC002679 | 1C (VP3) | 330 | 566 | 0 | 0 | 237 | |
| SPC002680 | protease 3C | 1502 | 1684 | 0 | 0 | 183 | |
| SPC002681 | 2A (P2-A) | 838 | 979 | 0 | 0 | 142 | |
| SPC002682 | 2B (P2-B) | 980 | 1077 | 0 | 0 | 98 | |
| SPC002683 | 3A (P3-A) | 1405 | 1479 | 0 | 0 | 75 | |
| SPC002684 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002685 | 3B (VPg) | 1480 | 1501 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |