| RVdb StrainID | CNM04755 | GenBank Accession | JN837687.1 |
| Species | RVC | Sequence Length | 6535 nt |
| Serotype | 43 Checked by RVdb | Serotype (GenBank) | 43 |
| Definition | Human rhinovirus C strain HRV-C43_p1075_s3911_2000 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C43_p1075_s3911_2000 | Sampling Date | 2000-10-02 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC007878 | 1A (VP4) | 260 | 460 | 0 | 0 | 201 | |
| SQC007879 | 1B (VP2) | 461 | 1270 | 0 | 0 | 810 | |
| SQC007880 | 1C (VP3) | 1271 | 1969 | 0 | 0 | 699 | |
| SQC007881 | 1D (VP1) | 1970 | 2785 | 0 | 0 | 816 | |
| SQC007882 | 2A (P2-A) | 2786 | 3211 | 0 | 0 | 426 | |
| SQC007883 | 2B (P2-B) | 3212 | 3502 | 0 | 0 | 291 | |
| SQC007884 | 2C (P2-C) | 3503 | 4477 | 0 | 0 | 975 | |
| SQC007885 | 3A (P3-A) | 4478 | 4705 | 0 | 0 | 228 | |
| SQC007886 | 3B (VPg) | 4706 | 4771 | 0 | 0 | 66 | |
| SQC007887 | 3D | 5321 | 0 | 0 | 1 | 1215 | |
| SQC007888 | CDS | 260 | 0 | 0 | 1 | 6276 | |
| SQC007889 | protease 3C | 4772 | 5320 | 0 | 0 | 549 | |
| SQC007890 | VP4/2 | 260 | 690 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002571 | CDS | 1 | 2092 | 0 | 0 | 2092 | |
| SPC002572 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002573 | 3D | 1688 | 2092 | 0 | 1 | 405 | |
| SPC002574 | 2C (P2-C) | 1082 | 1406 | 0 | 0 | 325 | |
| SPC002575 | 1D (VP1) | 571 | 842 | 0 | 0 | 272 | |
| SPC002576 | 1B (VP2) | 68 | 337 | 0 | 0 | 270 | |
| SPC002577 | 1C (VP3) | 338 | 570 | 0 | 0 | 233 | |
| SPC002578 | protease 3C | 1505 | 1687 | 0 | 0 | 183 | |
| SPC002579 | 2A (P2-A) | 843 | 984 | 0 | 0 | 142 | |
| SPC002580 | 2B (P2-B) | 985 | 1081 | 0 | 0 | 97 | |
| SPC002581 | 3A (P3-A) | 1407 | 1482 | 0 | 0 | 76 | |
| SPC002582 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002583 | 3B (VPg) | 1483 | 1504 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |