| RVdb StrainID | CNP04942 | GenBank Accession | JF781505.1 |
| Species | RVC | Sequence Length | 6662 nt |
| Serotype | 40 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Human rhinovirus C strain HRV-C40_p033_s2870_1999 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C40_p033_s2870_1999 | Sampling Date | -N/A- |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | -N/A- | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina GAIIx | Assembly Method | Velvet v. 1.0.13 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC012527 | 1A (VP4) | 439 | 639 | 0 | 0 | 201 | |
| SQC012528 | 1B (VP2) | 640 | 0 | 0 | 1 | 789 | |
| SQC012529 | 1C (VP3) | 0 | 2148 | 1 | 0 | 618 | |
| SQC012530 | 1D (VP1) | 2149 | 2961 | 0 | 0 | 813 | |
| SQC012531 | 2A (P2-A) | 2962 | 3387 | 0 | 0 | 426 | |
| SQC012532 | 2B (P2-B) | 3388 | 3681 | 0 | 0 | 294 | |
| SQC012533 | 2C (P2-C) | 3682 | 4662 | 0 | 0 | 981 | |
| SQC012534 | 3A (P3-A) | 4663 | 4887 | 0 | 0 | 225 | |
| SQC012535 | 3B (VPg) | 4888 | 4953 | 0 | 0 | 66 | |
| SQC012536 | 3D | 5503 | 0 | 0 | 1 | 1160 | |
| SQC012537 | 5'UTR | 0 | 438 | 1 | 0 | 438 | |
| SQC012538 | CDS | 439 | 0 | 0 | 1 | 6224 | |
| SQC012539 | protease 3C | 4954 | 5502 | 0 | 0 | 549 | |
| SQC012540 | VP4/2 | 439 | 869 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002132 | CDS | 1 | 2074 | 0 | 0 | 2074 | |
| SPC002133 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002134 | 3D | 1689 | 2074 | 0 | 1 | 386 | |
| SPC002135 | 2C (P2-C) | 1082 | 1408 | 0 | 0 | 327 | |
| SPC002136 | 1D (VP1) | 571 | 841 | 0 | 0 | 271 | |
| SPC002137 | 1B (VP2) | 68 | 330 | 0 | 1 | 263 | |
| SPC002138 | 1C (VP3) | 365 | 570 | 1 | 0 | 206 | |
| SPC002139 | protease 3C | 1506 | 1688 | 0 | 0 | 183 | |
| SPC002140 | 2A (P2-A) | 842 | 983 | 0 | 0 | 142 | |
| SPC002141 | 2B (P2-B) | 984 | 1081 | 0 | 0 | 98 | |
| SPC002142 | 3A (P3-A) | 1409 | 1483 | 0 | 0 | 75 | |
| SPC002143 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002144 | 3B (VPg) | 1484 | 1505 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |