| RVdb StrainID | CNM04765 | GenBank Accession | JN798570.1 |
| Species | RVC | Sequence Length | 6423 nt |
| Serotype | 7 Checked by RVdb | Serotype (GenBank) | 7 |
| Definition | Human rhinovirus C strain HRV-C07_p1028_sR3259_2010 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C07_p1028_sR3259_2010 | Sampling Date | 2010-03-05 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC007904 | 1A (VP4) | 247 | 447 | 0 | 0 | 201 | |
| SQC007905 | 1B (VP2) | 448 | 1233 | 0 | 0 | 786 | |
| SQC007906 | 1C (VP3) | 1234 | 1932 | 0 | 0 | 699 | |
| SQC007907 | 1D (VP1) | 1933 | 2748 | 0 | 0 | 816 | |
| SQC007908 | 2A (P2-A) | 2749 | 3174 | 0 | 0 | 426 | |
| SQC007909 | 2B (P2-B) | 3175 | 3465 | 0 | 0 | 291 | |
| SQC007910 | 2C (P2-C) | 3466 | 4440 | 0 | 0 | 975 | |
| SQC007911 | 3A (P3-A) | 4441 | 4668 | 0 | 0 | 228 | |
| SQC007912 | 3B (VPg) | 4669 | 4734 | 0 | 0 | 66 | |
| SQC007913 | 3D | 5284 | 0 | 0 | 1 | 1140 | |
| SQC007914 | CDS | 247 | 0 | 0 | 1 | 6177 | |
| SQC007915 | protease 3C | 4735 | 5283 | 0 | 0 | 549 | |
| SQC007916 | VP4/2 | 247 | 677 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002519 | CDS | 1 | 2059 | 0 | 0 | 2059 | |
| SPC002520 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002521 | 3D | 1680 | 2059 | 0 | 1 | 380 | |
| SPC002522 | 2C (P2-C) | 1074 | 1398 | 0 | 0 | 325 | |
| SPC002523 | 1D (VP1) | 563 | 834 | 0 | 0 | 272 | |
| SPC002524 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC002525 | 1C (VP3) | 330 | 562 | 0 | 0 | 233 | |
| SPC002526 | protease 3C | 1497 | 1679 | 0 | 0 | 183 | |
| SPC002527 | 2A (P2-A) | 835 | 976 | 0 | 0 | 142 | |
| SPC002528 | 2B (P2-B) | 977 | 1073 | 0 | 0 | 97 | |
| SPC002529 | 3A (P3-A) | 1399 | 1474 | 0 | 0 | 76 | |
| SPC002530 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002531 | 3B (VPg) | 1475 | 1496 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |