| RVdb StrainID | CNS04728 | GenBank Accession | JQ245963.1 |
| Species | RVC | Sequence Length | 6832 nt |
| Serotype | 40 Checked by RVdb | Serotype (GenBank) | 40 |
| Definition | Human rhinovirus C strain HRV-C40_p1009_s3787_1999 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C40_p1009_s3787_1999 | Sampling Date | 1999 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | -N/A- | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC016799 | 1A (VP4) | 440 | 640 | 0 | 0 | 201 | |
| SQC016800 | 1B (VP2) | 641 | 1426 | 0 | 0 | 786 | |
| SQC016801 | 1C (VP3) | 1427 | 2137 | 0 | 0 | 711 | |
| SQC016802 | 1D (VP1) | 2138 | 2950 | 0 | 0 | 813 | |
| SQC016803 | 2A (P2-A) | 2951 | 3376 | 0 | 0 | 426 | |
| SQC016804 | 2B (P2-B) | 3377 | 3673 | 0 | 0 | 297 | |
| SQC016805 | 2C (P2-C) | 3674 | 4651 | 0 | 0 | 978 | |
| SQC016806 | 3A (P3-A) | 4652 | 4876 | 0 | 0 | 225 | |
| SQC016807 | 3B (VPg) | 4877 | 4942 | 0 | 0 | 66 | |
| SQC016808 | 3D | 5492 | 0 | 0 | 1 | 1341 | |
| SQC016809 | 5'UTR | 0 | 439 | 1 | 0 | 439 | |
| SQC016810 | CDS | 440 | 0 | 0 | 1 | 6393 | |
| SQC016811 | protease 3C | 4943 | 5491 | 0 | 0 | 549 | |
| SQC016812 | VP4/2 | 440 | 870 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002751 | CDS | 1 | 2131 | 0 | 0 | 2131 | |
| SPC002752 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002753 | 3D | 1685 | 2131 | 0 | 1 | 447 | |
| SPC002754 | 2C (P2-C) | 1079 | 1404 | 0 | 0 | 326 | |
| SPC002755 | 1D (VP1) | 567 | 837 | 0 | 0 | 271 | |
| SPC002756 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC002757 | 1C (VP3) | 330 | 566 | 0 | 0 | 237 | |
| SPC002758 | protease 3C | 1502 | 1684 | 0 | 0 | 183 | |
| SPC002759 | 2A (P2-A) | 838 | 979 | 0 | 0 | 142 | |
| SPC002760 | 2B (P2-B) | 980 | 1078 | 0 | 0 | 99 | |
| SPC002761 | 3A (P3-A) | 1405 | 1479 | 0 | 0 | 75 | |
| SPC002762 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002763 | 3B (VPg) | 1480 | 1501 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |