| RVdb StrainID | CNC04754 | GenBank Accession | JN837688.1 |
| Species | RVC | Sequence Length | 7001 nt |
| Serotype | 15 Checked by RVdb | Serotype (GenBank) | 15 |
| Definition | Human rhinovirus C strain HRV-C15_p1259_s2935_1999 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C15_p1259_s2935_1999 | Sampling Date | 1999-12-11 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC003379 | 1A (VP4) | 529 | 729 | 0 | 0 | 201 | |
| SQC003380 | 1B (VP2) | 730 | 1524 | 0 | 0 | 795 | |
| SQC003381 | 1C (VP3) | 1525 | 2229 | 0 | 0 | 705 | |
| SQC003382 | 1D (VP1) | 2230 | 3057 | 0 | 0 | 828 | |
| SQC003383 | 2A (P2-A) | 3058 | 3483 | 0 | 0 | 426 | |
| SQC003384 | 2B (P2-B) | 3484 | 3780 | 0 | 0 | 297 | |
| SQC003385 | 2C (P2-C) | 3781 | 4758 | 0 | 0 | 978 | |
| SQC003386 | 3A (P3-A) | 4759 | 4983 | 0 | 0 | 225 | |
| SQC003387 | 3B (VPg) | 4984 | 5049 | 0 | 0 | 66 | |
| SQC003388 | 3D | 5599 | 6978 | 0 | 0 | 1380 | |
| SQC003389 | 5'UTR | 0 | 528 | 1 | 0 | 528 | |
| SQC003390 | CDS | 529 | 6981 | 0 | 0 | 6453 | |
| SQC003391 | protease 3C | 5050 | 5598 | 0 | 0 | 549 | |
| SQC003392 | VP4/2 | 529 | 959 | 0 | 0 | 431 | |
| SQC003393 | genome | 1 | 7001 | 1 | 1 | 7001 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002584 | CDS | 1 | 2150 | 0 | 0 | 2150 | |
| SPC002585 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002586 | 3D | 1691 | 2150 | 0 | 0 | 460 | |
| SPC002587 | 2C (P2-C) | 1085 | 1410 | 0 | 0 | 326 | |
| SPC002588 | 1D (VP1) | 568 | 843 | 0 | 0 | 276 | |
| SPC002589 | 1B (VP2) | 68 | 332 | 0 | 0 | 265 | |
| SPC002590 | 1C (VP3) | 333 | 567 | 0 | 0 | 235 | |
| SPC002591 | protease 3C | 1508 | 1690 | 0 | 0 | 183 | |
| SPC002592 | 2A (P2-A) | 844 | 985 | 0 | 0 | 142 | |
| SPC002593 | 2B (P2-B) | 986 | 1084 | 0 | 0 | 99 | |
| SPC002594 | 3A (P3-A) | 1411 | 1485 | 0 | 0 | 75 | |
| SPC002595 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002596 | 3B (VPg) | 1486 | 1507 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |