| RVdb StrainID | CNP04762 | GenBank Accession | JN815244.1 |
| Species | RVC | Sequence Length | 6911 nt |
| Serotype | 17 Checked by RVdb | Serotype (GenBank) | 17 |
| Definition | Human rhinovirus C strain HRV-C17_p1196_sR3009_2008 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C17_p1196_sR3009_2008 | Sampling Date | 2008-09-13 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC012387 | 1A (VP4) | 435 | 635 | 0 | 0 | 201 | |
| SQC012388 | 1B (VP2) | 636 | 1424 | 0 | 0 | 789 | |
| SQC012389 | 1C (VP3) | 1425 | 2201 | 0 | 0 | 777 | |
| SQC012390 | 1D (VP1) | 2202 | 3029 | 0 | 0 | 828 | |
| SQC012391 | 2A (P2-A) | 3030 | 3455 | 0 | 0 | 426 | |
| SQC012392 | 2B (P2-B) | 3456 | 3752 | 0 | 0 | 297 | |
| SQC012393 | 2C (P2-C) | 3753 | 0 | 0 | 1 | 858 | |
| SQC012394 | 3A (P3-A) | 0 | 4955 | 1 | 0 | 135 | |
| SQC012395 | 3B (VPg) | 4956 | 5021 | 0 | 0 | 66 | |
| SQC012396 | 3D | 5571 | 0 | 0 | 1 | 1341 | |
| SQC012397 | 5'UTR | 0 | 434 | 1 | 0 | 434 | |
| SQC012398 | CDS | 435 | 0 | 0 | 1 | 6477 | |
| SQC012399 | protease 3C | 5022 | 5570 | 0 | 0 | 549 | |
| SQC012400 | VP4/2 | 435 | 865 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002647 | CDS | 1 | 2159 | 0 | 0 | 2159 | |
| SPC002648 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002649 | 3D | 1713 | 2159 | 0 | 1 | 447 | |
| SPC002650 | 2C (P2-C) | 1107 | 1392 | 0 | 1 | 286 | |
| SPC002651 | 1D (VP1) | 590 | 865 | 0 | 0 | 276 | |
| SPC002652 | 1B (VP2) | 68 | 330 | 0 | 0 | 263 | |
| SPC002653 | 1C (VP3) | 331 | 589 | 0 | 0 | 259 | |
| SPC002654 | protease 3C | 1530 | 1712 | 0 | 0 | 183 | |
| SPC002655 | 2A (P2-A) | 866 | 1007 | 0 | 0 | 142 | |
| SPC002656 | 2B (P2-B) | 1008 | 1106 | 0 | 0 | 99 | |
| SPC002657 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002658 | 3A (P3-A) | 1463 | 1507 | 1 | 0 | 45 | |
| SPC002659 | 3B (VPg) | 1508 | 1529 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |