| RVdb StrainID | CNC04759 | GenBank Accession | JN815249.1 |
| Species | RVC | Sequence Length | 6734 nt |
| Serotype | 43 Checked by RVdb | Serotype (GenBank) | 43 |
| Definition | Human rhinovirus C strain HRV-C43_p1281_s6410_1999 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C43_p1281_s6410_1999 | Sampling Date | 1999-11-19 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC003394 | 1A (VP4) | 340 | 540 | 0 | 0 | 201 | |
| SQC003395 | 1B (VP2) | 541 | 1329 | 0 | 0 | 789 | |
| SQC003396 | 1C (VP3) | 1330 | 2028 | 0 | 0 | 699 | |
| SQC003397 | 1D (VP1) | 2029 | 2865 | 0 | 0 | 837 | |
| SQC003398 | 2A (P2-A) | 2866 | 3279 | 0 | 0 | 414 | |
| SQC003399 | 2B (P2-B) | 3280 | 3570 | 0 | 0 | 291 | |
| SQC003400 | 2C (P2-C) | 3571 | 4545 | 0 | 0 | 975 | |
| SQC003401 | 3A (P3-A) | 4546 | 4773 | 0 | 0 | 228 | |
| SQC003402 | 3B (VPg) | 4774 | 4839 | 0 | 0 | 66 | |
| SQC003403 | 3D | 5530 | 0 | 0 | 1 | 1205 | |
| SQC003404 | CDS | 340 | 0 | 0 | 1 | 6395 | |
| SQC003405 | protease 3C | 4840 | 5529 | 0 | 0 | 690 | |
| SQC003406 | VP4/2 | 340 | 770 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002686 | CDS | 1 | 2132 | 0 | 0 | 2132 | |
| SPC002687 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002688 | 3D | 1731 | 2132 | 0 | 1 | 402 | |
| SPC002689 | 2C (P2-C) | 1078 | 1402 | 0 | 0 | 325 | |
| SPC002690 | 1D (VP1) | 564 | 842 | 0 | 0 | 279 | |
| SPC002691 | 1B (VP2) | 68 | 330 | 0 | 0 | 263 | |
| SPC002692 | 1C (VP3) | 331 | 563 | 0 | 0 | 233 | |
| SPC002693 | protease 3C | 1501 | 1730 | 0 | 0 | 230 | |
| SPC002694 | 2A (P2-A) | 843 | 980 | 0 | 0 | 138 | |
| SPC002695 | 2B (P2-B) | 981 | 1077 | 0 | 0 | 97 | |
| SPC002696 | 3A (P3-A) | 1403 | 1478 | 0 | 0 | 76 | |
| SPC002697 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002698 | 3B (VPg) | 1479 | 1500 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |