| RVdb StrainID | CNS04768 | GenBank Accession | JN798567.1 |
| Species | RVC | Sequence Length | 6717 nt |
| Serotype | 3 Checked by RVdb | Serotype (GenBank) | 3 |
| Definition | Human rhinovirus C strain HRV-C03_p1280_s6359_1999 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C03_p1280_s6359_1999 | Sampling Date | 1999-07-06 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC016857 | 1A (VP4) | 262 | 462 | 0 | 0 | 201 | |
| SQC016858 | 1B (VP2) | 463 | 1251 | 0 | 0 | 789 | |
| SQC016859 | 1C (VP3) | 1252 | 1950 | 0 | 0 | 699 | |
| SQC016860 | 1D (VP1) | 1951 | 2775 | 0 | 0 | 825 | |
| SQC016861 | 2A (P2-A) | 2776 | 3201 | 0 | 0 | 426 | |
| SQC016862 | 2B (P2-B) | 3202 | 3492 | 0 | 0 | 291 | |
| SQC016863 | 2C (P2-C) | 3493 | 4467 | 0 | 0 | 975 | |
| SQC016864 | 3'UTR | 6694 | 0 | 0 | 1 | 24 | |
| SQC016865 | 3A (P3-A) | 4468 | 4695 | 0 | 0 | 228 | |
| SQC016866 | 3B (VPg) | 4696 | 4761 | 0 | 0 | 66 | |
| SQC016867 | 3D | 5311 | 6690 | 0 | 0 | 1380 | |
| SQC016868 | CDS | 262 | 6693 | 0 | 0 | 6432 | |
| SQC016869 | protease 3C | 4762 | 5310 | 0 | 0 | 549 | |
| SQC016870 | VP4/2 | 262 | 692 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002480 | CDS | 1 | 2143 | 0 | 0 | 2143 | |
| SPC002481 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002482 | 3D | 1684 | 2143 | 0 | 0 | 460 | |
| SPC002483 | 2C (P2-C) | 1078 | 1402 | 0 | 0 | 325 | |
| SPC002484 | 1D (VP1) | 564 | 838 | 0 | 0 | 275 | |
| SPC002485 | 1B (VP2) | 68 | 330 | 0 | 0 | 263 | |
| SPC002486 | 1C (VP3) | 331 | 563 | 0 | 0 | 233 | |
| SPC002487 | protease 3C | 1501 | 1683 | 0 | 0 | 183 | |
| SPC002488 | 2A (P2-A) | 839 | 980 | 0 | 0 | 142 | |
| SPC002489 | 2B (P2-B) | 981 | 1077 | 0 | 0 | 97 | |
| SPC002490 | 3A (P3-A) | 1403 | 1478 | 0 | 0 | 76 | |
| SPC002491 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002492 | 3B (VPg) | 1479 | 1500 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |