| RVdb StrainID | CNZ04736 | GenBank Accession | JN990700.1 |
| Species | RVC | Sequence Length | 6597 nt |
| Serotype | 3 Checked by RVdb | Serotype (GenBank) | 3 |
| Definition | Human rhinovirus C strain HRV-C03_p1139_sR1051_2009 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C03_p1139_sR1051_2009 | Sampling Date | 2009 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | -N/A- | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC021380 | 1A (VP4) | 207 | 407 | 0 | 0 | 201 | |
| SQC021381 | 1B (VP2) | 408 | 1196 | 0 | 0 | 789 | |
| SQC021382 | 1C (VP3) | 1197 | 1895 | 0 | 0 | 699 | |
| SQC021383 | 1D (VP1) | 1896 | 2720 | 0 | 0 | 825 | |
| SQC021384 | 2A (P2-A) | 2721 | 3146 | 0 | 0 | 426 | |
| SQC021385 | 2B (P2-B) | 3147 | 3437 | 0 | 0 | 291 | |
| SQC021386 | 2C (P2-C) | 3438 | 4412 | 0 | 0 | 975 | |
| SQC021387 | 3A (P3-A) | 4413 | 4640 | 0 | 0 | 228 | |
| SQC021388 | 3B (VPg) | 4641 | 4706 | 0 | 0 | 66 | |
| SQC021389 | 3D | 5256 | 0 | 0 | 1 | 1342 | |
| SQC021390 | CDS | 207 | 0 | 0 | 1 | 6391 | |
| SQC021391 | protease 3C | 4707 | 5255 | 0 | 0 | 549 | |
| SQC021392 | VP4/2 | 207 | 637 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002712 | CDS | 1 | 2130 | 0 | 0 | 2130 | |
| SPC002713 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002714 | 3D | 1684 | 2130 | 0 | 1 | 447 | |
| SPC002715 | 2C (P2-C) | 1078 | 1402 | 0 | 0 | 325 | |
| SPC002716 | 1D (VP1) | 564 | 838 | 0 | 0 | 275 | |
| SPC002717 | 1B (VP2) | 68 | 330 | 0 | 0 | 263 | |
| SPC002718 | 1C (VP3) | 331 | 563 | 0 | 0 | 233 | |
| SPC002719 | protease 3C | 1501 | 1683 | 0 | 0 | 183 | |
| SPC002720 | 2A (P2-A) | 839 | 980 | 0 | 0 | 142 | |
| SPC002721 | 2B (P2-B) | 981 | 1077 | 0 | 0 | 97 | |
| SPC002722 | 3A (P3-A) | 1403 | 1478 | 0 | 0 | 76 | |
| SPC002723 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002724 | 3B (VPg) | 1479 | 1500 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |