| RVdb StrainID | CNP04612 | GenBank Accession | JX025557.1 |
| Species | RVC | Sequence Length | 6584 nt |
| Serotype | 2 Checked by RVdb | Serotype (GenBank) | 2 |
| Definition | Human rhinovirus C strain HRV-C02_p1104_s2978_2000 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C02_p1104_s2978_2000 | Sampling Date | 2000 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | -N/A- | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.2.01 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC012299 | 1A (VP4) | 193 | 393 | 0 | 0 | 201 | |
| SQC012300 | 1B (VP2) | 394 | 1179 | 0 | 0 | 786 | |
| SQC012301 | 1C (VP3) | 1180 | 1890 | 0 | 0 | 711 | |
| SQC012302 | 1D (VP1) | 1891 | 2703 | 0 | 0 | 813 | |
| SQC012303 | 2A (P2-A) | 2704 | 3129 | 0 | 0 | 426 | |
| SQC012304 | 2B (P2-B) | 3130 | 3426 | 0 | 0 | 297 | |
| SQC012305 | 2C (P2-C) | 3427 | 4404 | 0 | 0 | 978 | |
| SQC012306 | 3A (P3-A) | 4405 | 4629 | 0 | 0 | 225 | |
| SQC012307 | 3B (VPg) | 4630 | 4695 | 0 | 0 | 66 | |
| SQC012308 | 3D | 5245 | 0 | 0 | 1 | 1340 | |
| SQC012309 | CDS | 193 | 0 | 0 | 1 | 6392 | |
| SQC012310 | protease 3C | 4696 | 5244 | 0 | 0 | 549 | |
| SQC012311 | VP4/2 | 193 | 623 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC003357 | CDS | 1 | 2131 | 0 | 0 | 2131 | |
| SPC003358 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC003359 | 3D | 1685 | 2131 | 0 | 1 | 447 | |
| SPC003360 | 2C (P2-C) | 1079 | 1404 | 0 | 0 | 326 | |
| SPC003361 | 1D (VP1) | 567 | 837 | 0 | 0 | 271 | |
| SPC003362 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC003363 | 1C (VP3) | 330 | 566 | 0 | 0 | 237 | |
| SPC003364 | protease 3C | 1502 | 1684 | 0 | 0 | 183 | |
| SPC003365 | 2A (P2-A) | 838 | 979 | 0 | 0 | 142 | |
| SPC003366 | 2B (P2-B) | 980 | 1078 | 0 | 0 | 99 | |
| SPC003367 | 3A (P3-A) | 1405 | 1479 | 0 | 0 | 75 | |
| SPC003368 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC003369 | 3B (VPg) | 1480 | 1501 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |