| RVdb StrainID | CNZ04606 | GenBank Accession | JX193796.1 |
| Species | RVC | Sequence Length | 6632 nt |
| Serotype | 26 Checked by RVdb | Serotype (GenBank) | 26 |
| Definition | Human rhinovirus C strain HRV-C26_p1052_s3034_2000 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C26_p1052_s3034_2000 | Sampling Date | 2000 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | -N/A- | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC021295 | 1A (VP4) | 232 | 432 | 0 | 0 | 201 | |
| SQC021296 | 1B (VP2) | 433 | 1218 | 0 | 0 | 786 | |
| SQC021297 | 1C (VP3) | 1219 | 1926 | 0 | 0 | 708 | |
| SQC021298 | 1D (VP1) | 1927 | 2748 | 0 | 0 | 822 | |
| SQC021299 | 2A (P2-A) | 2749 | 3174 | 0 | 0 | 426 | |
| SQC021300 | 2B (P2-B) | 3175 | 3471 | 0 | 0 | 297 | |
| SQC021301 | 2C (P2-C) | 3472 | 4446 | 0 | 0 | 975 | |
| SQC021302 | 3A (P3-A) | 4447 | 4671 | 0 | 0 | 225 | |
| SQC021303 | 3B (VPg) | 4672 | 4737 | 0 | 0 | 66 | |
| SQC021304 | 3D | 5287 | 0 | 0 | 1 | 1346 | |
| SQC021305 | CDS | 232 | 0 | 0 | 1 | 6401 | |
| SQC021306 | protease 3C | 4738 | 5286 | 0 | 0 | 549 | |
| SQC021307 | VP4/2 | 232 | 661 | 0 | 0 | 430 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC003396 | CDS | 1 | 2134 | 0 | 0 | 2134 | |
| SPC003397 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC003398 | 3D | 1686 | 2134 | 0 | 1 | 449 | |
| SPC003399 | 2C (P2-C) | 1081 | 1405 | 0 | 0 | 325 | |
| SPC003400 | 1D (VP1) | 566 | 839 | 0 | 0 | 274 | |
| SPC003401 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC003402 | 1C (VP3) | 330 | 565 | 0 | 0 | 236 | |
| SPC003403 | protease 3C | 1503 | 1685 | 0 | 0 | 183 | |
| SPC003404 | 2A (P2-A) | 840 | 981 | 0 | 0 | 142 | |
| SPC003405 | 2B (P2-B) | 982 | 1080 | 0 | 0 | 99 | |
| SPC003406 | 3A (P3-A) | 1406 | 1480 | 0 | 0 | 75 | |
| SPC003407 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC003408 | 3B (VPg) | 1481 | 1502 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |