| RVdb StrainID | CNP04757 | GenBank Accession | JN837685.1 |
| Species | RVC | Sequence Length | 6689 nt |
| Serotype | 25 Checked by RVdb | Serotype (GenBank) | 25 |
| Definition | Human rhinovirus C strain HRV-C25_p1013_s2893_1999 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C25_p1013_s2893_1999 | Sampling Date | 1999-10-29 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC012374 | 1A (VP4) | 408 | 608 | 0 | 0 | 201 | |
| SQC012375 | 1B (VP2) | 609 | 1403 | 0 | 0 | 795 | |
| SQC012376 | 1C (VP3) | 1404 | 2108 | 0 | 0 | 705 | |
| SQC012377 | 1D (VP1) | 2109 | 2933 | 0 | 0 | 825 | |
| SQC012378 | 2A (P2-A) | 2934 | 3359 | 0 | 0 | 426 | |
| SQC012379 | 2B (P2-B) | 3360 | 3656 | 0 | 0 | 297 | |
| SQC012380 | 2C (P2-C) | 3657 | 4634 | 0 | 0 | 978 | |
| SQC012381 | 3A (P3-A) | 4635 | 4859 | 0 | 0 | 225 | |
| SQC012382 | 3B (VPg) | 4860 | 4925 | 0 | 0 | 66 | |
| SQC012383 | 3D | 5475 | 0 | 0 | 1 | 1215 | |
| SQC012384 | CDS | 408 | 0 | 0 | 1 | 6282 | |
| SQC012385 | protease 3C | 4926 | 5474 | 0 | 0 | 549 | |
| SQC012386 | VP4/2 | 408 | 838 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002545 | CDS | 1 | 2094 | 0 | 0 | 2094 | |
| SPC002546 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002547 | 3D | 1690 | 2094 | 0 | 1 | 405 | |
| SPC002548 | 2C (P2-C) | 1084 | 1409 | 0 | 0 | 326 | |
| SPC002549 | 1D (VP1) | 568 | 842 | 0 | 0 | 275 | |
| SPC002550 | 1B (VP2) | 68 | 332 | 0 | 0 | 265 | |
| SPC002551 | 1C (VP3) | 333 | 567 | 0 | 0 | 235 | |
| SPC002552 | protease 3C | 1507 | 1689 | 0 | 0 | 183 | |
| SPC002553 | 2A (P2-A) | 843 | 984 | 0 | 0 | 142 | |
| SPC002554 | 2B (P2-B) | 985 | 1083 | 0 | 0 | 99 | |
| SPC002555 | 3A (P3-A) | 1410 | 1484 | 0 | 0 | 75 | |
| SPC002556 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002557 | 3B (VPg) | 1485 | 1506 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |