| RVdb StrainID | CNS04753 | GenBank Accession | JN837689.1 |
| Species | RVC | Sequence Length | 6948 nt |
| Serotype | 7 Checked by RVdb | Serotype (GenBank) | 7 |
| Definition | Human rhinovirus C strain HRV-C07_p1064_sR982_2009_g1 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C07_p1064_sR982_2009_g1 | Sampling Date | 2009-04-25 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC016817 | 1A (VP4) | 541 | 741 | 0 | 0 | 201 | |
| SQC016818 | 1B (VP2) | 742 | 1527 | 0 | 0 | 786 | |
| SQC016819 | 1C (VP3) | 1528 | 2226 | 0 | 0 | 699 | |
| SQC016820 | 1D (VP1) | 2227 | 3042 | 0 | 0 | 816 | |
| SQC016821 | 2A (P2-A) | 3043 | 3468 | 0 | 0 | 426 | |
| SQC016822 | 2B (P2-B) | 3469 | 3759 | 0 | 0 | 291 | |
| SQC016823 | 2C (P2-C) | 3760 | 4734 | 0 | 0 | 975 | |
| SQC016824 | 3A (P3-A) | 4735 | 4962 | 0 | 0 | 228 | |
| SQC016825 | 3B (VPg) | 4963 | 5028 | 0 | 0 | 66 | |
| SQC016826 | 3D | 5578 | 0 | 0 | 1 | 1371 | |
| SQC016827 | 5'UTR | 0 | 540 | 1 | 0 | 540 | |
| SQC016828 | CDS | 541 | 0 | 0 | 1 | 6408 | |
| SQC016829 | protease 3C | 5029 | 5577 | 0 | 0 | 549 | |
| SQC016830 | VP4/2 | 541 | 971 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002597 | CDS | 1 | 2136 | 0 | 0 | 2136 | |
| SPC002598 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002599 | 3D | 1680 | 2136 | 0 | 1 | 457 | |
| SPC002600 | 2C (P2-C) | 1074 | 1398 | 0 | 0 | 325 | |
| SPC002601 | 1D (VP1) | 563 | 834 | 0 | 0 | 272 | |
| SPC002602 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC002603 | 1C (VP3) | 330 | 562 | 0 | 0 | 233 | |
| SPC002604 | protease 3C | 1497 | 1679 | 0 | 0 | 183 | |
| SPC002605 | 2A (P2-A) | 835 | 976 | 0 | 0 | 142 | |
| SPC002606 | 2B (P2-B) | 977 | 1073 | 0 | 0 | 97 | |
| SPC002607 | 3A (P3-A) | 1399 | 1474 | 0 | 0 | 76 | |
| SPC002608 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002609 | 3B (VPg) | 1475 | 1496 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |