| RVdb StrainID | CNZ04771 | GenBank Accession | JN798559.1 |
| Species | RVC | Sequence Length | 6503 nt |
| Serotype | 7 Checked by RVdb | Serotype (GenBank) | 7 |
| Definition | Human rhinovirus C strain HRV-C07_p1008_sR2528_2009 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C07_p1008_sR2528_2009 | Sampling Date | 2009-04-25 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC021451 | 1A (VP4) | 229 | 429 | 0 | 0 | 201 | |
| SQC021452 | 1B (VP2) | 430 | 1215 | 0 | 0 | 786 | |
| SQC021453 | 1C (VP3) | 1216 | 1914 | 0 | 0 | 699 | |
| SQC021454 | 1D (VP1) | 1915 | 2730 | 0 | 0 | 816 | |
| SQC021455 | 2A (P2-A) | 2731 | 3156 | 0 | 0 | 426 | |
| SQC021456 | 2B (P2-B) | 3157 | 3447 | 0 | 0 | 291 | |
| SQC021457 | 2C (P2-C) | 3448 | 4422 | 0 | 0 | 975 | |
| SQC021458 | 3A (P3-A) | 4423 | 4650 | 0 | 0 | 228 | |
| SQC021459 | 3B (VPg) | 4651 | 4716 | 0 | 0 | 66 | |
| SQC021460 | 3D | 5266 | 0 | 0 | 1 | 1238 | |
| SQC021461 | CDS | 229 | 0 | 0 | 1 | 6275 | |
| SQC021462 | protease 3C | 4717 | 5265 | 0 | 0 | 549 | |
| SQC021463 | VP4/2 | 229 | 659 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002441 | CDS | 1 | 2091 | 0 | 0 | 2091 | |
| SPC002442 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002443 | 3D | 1680 | 2091 | 0 | 1 | 412 | |
| SPC002444 | 2C (P2-C) | 1074 | 1398 | 0 | 0 | 325 | |
| SPC002445 | 1D (VP1) | 563 | 834 | 0 | 0 | 272 | |
| SPC002446 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC002447 | 1C (VP3) | 330 | 562 | 0 | 0 | 233 | |
| SPC002448 | protease 3C | 1497 | 1679 | 0 | 0 | 183 | |
| SPC002449 | 2A (P2-A) | 835 | 976 | 0 | 0 | 142 | |
| SPC002450 | 2B (P2-B) | 977 | 1073 | 0 | 0 | 97 | |
| SPC002451 | 3A (P3-A) | 1399 | 1474 | 0 | 0 | 76 | |
| SPC002452 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002453 | 3B (VPg) | 1475 | 1496 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |