| RVdb StrainID | CNM04615 | GenBank Accession | JQ994498.1 |
| Species | RVC | Sequence Length | 6735 nt |
| Serotype | 32 Checked by RVdb | Serotype (GenBank) | 32 |
| Definition | Human rhinovirus C strain HRV-C32_p1086_sR458_2007 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C32_p1086_sR458_2007 | Sampling Date | 2007 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | -N/A- | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.2.01 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC007802 | 1A (VP4) | 527 | 727 | 0 | 0 | 201 | |
| SQC007803 | 1B (VP2) | 728 | 1516 | 0 | 0 | 789 | |
| SQC007804 | 1C (VP3) | 1517 | 2215 | 0 | 0 | 699 | |
| SQC007805 | 1D (VP1) | 2216 | 3034 | 0 | 0 | 819 | |
| SQC007806 | 2A (P2-A) | 3035 | 3460 | 0 | 0 | 426 | |
| SQC007807 | 2B (P2-B) | 3461 | 3754 | 0 | 0 | 294 | |
| SQC007808 | 2C (P2-C) | 3755 | 4729 | 0 | 0 | 975 | |
| SQC007809 | 3A (P3-A) | 4730 | 4957 | 0 | 0 | 228 | |
| SQC007810 | 3B (VPg) | 4958 | 5023 | 0 | 0 | 66 | |
| SQC007811 | 3D | 5573 | 0 | 0 | 1 | 1163 | |
| SQC007812 | 5'UTR | 0 | 526 | 1 | 0 | 526 | |
| SQC007813 | CDS | 527 | 0 | 0 | 1 | 6209 | |
| SQC007814 | protease 3C | 5024 | 5572 | 0 | 0 | 549 | |
| SQC007815 | VP4/2 | 527 | 957 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC003318 | CDS | 1 | 2070 | 0 | 0 | 2070 | |
| SPC003319 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC003320 | 3D | 1683 | 2070 | 0 | 1 | 388 | |
| SPC003321 | 2C (P2-C) | 1077 | 1401 | 0 | 0 | 325 | |
| SPC003322 | 1D (VP1) | 564 | 836 | 0 | 0 | 273 | |
| SPC003323 | 1B (VP2) | 68 | 330 | 0 | 0 | 263 | |
| SPC003324 | 1C (VP3) | 331 | 563 | 0 | 0 | 233 | |
| SPC003325 | protease 3C | 1500 | 1682 | 0 | 0 | 183 | |
| SPC003326 | 2A (P2-A) | 837 | 978 | 0 | 0 | 142 | |
| SPC003327 | 2B (P2-B) | 979 | 1076 | 0 | 0 | 98 | |
| SPC003328 | 3A (P3-A) | 1402 | 1477 | 0 | 0 | 76 | |
| SPC003329 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC003330 | 3B (VPg) | 1478 | 1499 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |