| RVdb StrainID | CNS04763 | GenBank Accession | JN815240.1 |
| Species | RVC | Sequence Length | 6794 nt |
| Serotype | 17 Checked by RVdb | Serotype (GenBank) | 17 |
| Definition | Human rhinovirus C strain HRV-C17_p1210_sR2132_2009 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C17_p1210_sR2132_2009 | Sampling Date | 2009-03-10 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC016844 | 1A (VP4) | 405 | 605 | 0 | 0 | 201 | |
| SQC016845 | 1B (VP2) | 606 | 1394 | 0 | 0 | 789 | |
| SQC016846 | 1C (VP3) | 1395 | 2099 | 0 | 0 | 705 | |
| SQC016847 | 1D (VP1) | 2100 | 2924 | 0 | 0 | 825 | |
| SQC016848 | 2A (P2-A) | 2925 | 3350 | 0 | 0 | 426 | |
| SQC016849 | 2B (P2-B) | 3351 | 3647 | 0 | 0 | 297 | |
| SQC016850 | 2C (P2-C) | 3648 | 4625 | 0 | 0 | 978 | |
| SQC016851 | 3A (P3-A) | 4626 | 4850 | 0 | 0 | 225 | |
| SQC016852 | 3B (VPg) | 4851 | 4916 | 0 | 0 | 66 | |
| SQC016853 | 3D | 5466 | 0 | 0 | 1 | 1329 | |
| SQC016854 | CDS | 405 | 0 | 0 | 1 | 6390 | |
| SQC016855 | protease 3C | 4917 | 5465 | 0 | 0 | 549 | |
| SQC016856 | VP4/2 | 405 | 835 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002634 | CDS | 1 | 2130 | 0 | 0 | 2130 | |
| SPC002635 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002636 | 3D | 1688 | 2130 | 0 | 1 | 443 | |
| SPC002637 | 2C (P2-C) | 1082 | 1407 | 0 | 0 | 326 | |
| SPC002638 | 1D (VP1) | 566 | 840 | 0 | 0 | 275 | |
| SPC002639 | 1B (VP2) | 68 | 330 | 0 | 0 | 263 | |
| SPC002640 | 1C (VP3) | 331 | 565 | 0 | 0 | 235 | |
| SPC002641 | protease 3C | 1505 | 1687 | 0 | 0 | 183 | |
| SPC002642 | 2A (P2-A) | 841 | 982 | 0 | 0 | 142 | |
| SPC002643 | 2B (P2-B) | 983 | 1081 | 0 | 0 | 99 | |
| SPC002644 | 3A (P3-A) | 1408 | 1482 | 0 | 0 | 75 | |
| SPC002645 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002646 | 3B (VPg) | 1483 | 1504 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |