| RVdb StrainID | CNC04769 | GenBank Accession | JN798566.1 |
| Species | RVC | Sequence Length | 6801 nt |
| Serotype | 49 Checked by RVdb | Serotype (GenBank) | 49 |
| Definition | Human rhinovirus C strain HRV-C49_p1277_s6237_2000 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C49_p1277_s6237_2000 | Sampling Date | 2000-06-16 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC003421 | 1A (VP4) | 610 | 810 | 0 | 0 | 201 | |
| SQC003422 | 1B (VP2) | 811 | 1593 | 0 | 0 | 783 | |
| SQC003423 | 1C (VP3) | 1594 | 2298 | 0 | 0 | 705 | |
| SQC003424 | 1D (VP1) | 2299 | 3120 | 0 | 0 | 822 | |
| SQC003425 | 2A (P2-A) | 3121 | 3546 | 0 | 0 | 426 | |
| SQC003426 | 2B (P2-B) | 3547 | 3843 | 0 | 0 | 297 | |
| SQC003427 | 2C (P2-C) | 3844 | 4821 | 0 | 0 | 978 | |
| SQC003428 | 3A (P3-A) | 4822 | 5046 | 0 | 0 | 225 | |
| SQC003429 | 3B (VPg) | 5047 | 5112 | 0 | 0 | 66 | |
| SQC003430 | 3D | 5662 | 0 | 0 | 1 | 1140 | |
| SQC003431 | 5'UTR | 0 | 609 | 1 | 0 | 609 | |
| SQC003432 | CDS | 610 | 0 | 0 | 1 | 6192 | |
| SQC003433 | protease 3C | 5113 | 5661 | 0 | 0 | 549 | |
| SQC003434 | VP4/2 | 610 | 1040 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002467 | CDS | 1 | 2064 | 0 | 0 | 2064 | |
| SPC002468 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002469 | 3D | 1685 | 2064 | 0 | 1 | 380 | |
| SPC002470 | 2C (P2-C) | 1079 | 1404 | 0 | 0 | 326 | |
| SPC002471 | 1D (VP1) | 564 | 837 | 0 | 0 | 274 | |
| SPC002472 | 1B (VP2) | 68 | 328 | 0 | 0 | 261 | |
| SPC002473 | 1C (VP3) | 329 | 563 | 0 | 0 | 235 | |
| SPC002474 | protease 3C | 1502 | 1684 | 0 | 0 | 183 | |
| SPC002475 | 2A (P2-A) | 838 | 979 | 0 | 0 | 142 | |
| SPC002476 | 2B (P2-B) | 980 | 1078 | 0 | 0 | 99 | |
| SPC002477 | 3A (P3-A) | 1405 | 1479 | 0 | 0 | 75 | |
| SPC002478 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002479 | 3B (VPg) | 1480 | 1501 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |