| RVdb StrainID | CNP04752 | GenBank Accession | JN837691.1 |
| Species | RVC | Sequence Length | 6203 nt |
| Serotype | 38 Corrected by RVdb | Serotype (GenBank) | 5 |
| Definition | Human rhinovirus C strain HRV-C05_p1195_sR2110_2009 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C05_p1195_sR2110_2009 | Sampling Date | 2009-05-09 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC012361 | 1A (VP4) | 0 | 0 | 1 | 1 | 2 | |
| SQC012362 | 1B (VP2) | 0 | 682 | 1 | 0 | 682 | |
| SQC012363 | 1C (VP3) | 683 | 1399 | 0 | 0 | 717 | |
| SQC012364 | 1D (VP1) | 1400 | 2224 | 0 | 0 | 825 | |
| SQC012365 | 2A (P2-A) | 2225 | 2650 | 0 | 0 | 426 | |
| SQC012366 | 2B (P2-B) | 2651 | 2947 | 0 | 0 | 297 | |
| SQC012367 | 2C (P2-C) | 2948 | 3925 | 0 | 0 | 978 | |
| SQC012368 | 3'UTR | 6149 | 0 | 0 | 1 | 39 | |
| SQC012369 | 3A (P3-A) | 3926 | 4150 | 0 | 0 | 225 | |
| SQC012370 | 3B (VPg) | 4151 | 4216 | 0 | 0 | 66 | |
| SQC012371 | 3D | 4766 | 6145 | 0 | 0 | 1380 | |
| SQC012372 | CDS | 0 | 6148 | 1 | 0 | 6148 | |
| SQC012373 | protease 3C | 4217 | 4765 | 0 | 0 | 549 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002610 | CDS | 1 | 2048 | 0 | 0 | 2048 | |
| SPC002611 | 3D | 1589 | 2048 | 0 | 0 | 460 | |
| SPC002612 | 2C (P2-C) | 983 | 1308 | 0 | 0 | 326 | |
| SPC002613 | 1D (VP1) | 467 | 741 | 0 | 0 | 275 | |
| SPC002614 | 1C (VP3) | 228 | 466 | 0 | 0 | 239 | |
| SPC002615 | 1B (VP2) | 1 | 227 | 1 | 0 | 227 | |
| SPC002616 | protease 3C | 1406 | 1588 | 0 | 0 | 183 | |
| SPC002617 | 2A (P2-A) | 742 | 883 | 0 | 0 | 142 | |
| SPC002618 | 2B (P2-B) | 884 | 982 | 0 | 0 | 99 | |
| SPC002619 | 3A (P3-A) | 1309 | 1383 | 0 | 0 | 75 | |
| SPC002620 | 3B (VPg) | 1384 | 1405 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |