| RVdb StrainID | CNP04792 | GenBank Accession | JN621242.1 |
| Species | RVC | Sequence Length | 6883 nt |
| Serotype | 22 Checked by RVdb | Serotype (GenBank) | 22 |
| Definition | Human rhinovirus C strain HRV-C22_p1268_s3839_1999 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C22_p1268_s3839_1999 | Sampling Date | 1999-10-26 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC012426 | 1A (VP4) | 522 | 722 | 0 | 0 | 201 | |
| SQC012427 | 1B (VP2) | 723 | 1511 | 0 | 0 | 789 | |
| SQC012428 | 1C (VP3) | 1512 | 2210 | 0 | 0 | 699 | |
| SQC012429 | 1D (VP1) | 2211 | 3026 | 0 | 0 | 816 | |
| SQC012430 | 2A (P2-A) | 3027 | 3452 | 0 | 0 | 426 | |
| SQC012431 | 2B (P2-B) | 3453 | 3743 | 0 | 0 | 291 | |
| SQC012432 | 2C (P2-C) | 3744 | 4718 | 0 | 0 | 975 | |
| SQC012433 | 3A (P3-A) | 4719 | 4946 | 0 | 0 | 228 | |
| SQC012434 | 3B (VPg) | 4947 | 5012 | 0 | 0 | 66 | |
| SQC012435 | 3D | 5562 | 0 | 0 | 1 | 1322 | |
| SQC012436 | 5'UTR | 0 | 521 | 1 | 0 | 521 | |
| SQC012437 | CDS | 522 | 0 | 0 | 1 | 6362 | |
| SQC012438 | protease 3C | 5013 | 5561 | 0 | 0 | 549 | |
| SQC012439 | VP4/2 | 522 | 952 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002423 | CDS | 1 | 2121 | 0 | 0 | 2121 | |
| SPC002424 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002425 | 3D | 1681 | 2121 | 0 | 1 | 441 | |
| SPC002426 | 2C (P2-C) | 1075 | 1399 | 0 | 0 | 325 | |
| SPC002427 | 1D (VP1) | 564 | 835 | 0 | 0 | 272 | |
| SPC002428 | 1B (VP2) | 68 | 330 | 0 | 0 | 263 | |
| SPC002429 | 1C (VP3) | 331 | 563 | 0 | 0 | 233 | |
| SPC002430 | protease 3C | 1498 | 1680 | 0 | 0 | 183 | |
| SPC002431 | 2A (P2-A) | 836 | 977 | 0 | 0 | 142 | |
| SPC002432 | 2B (P2-B) | 978 | 1074 | 0 | 0 | 97 | |
| SPC002433 | 3A (P3-A) | 1400 | 1475 | 0 | 0 | 76 | |
| SPC002434 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002435 | 3B (VPg) | 1476 | 1497 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |