| RVdb StrainID | CNZ04751 | GenBank Accession | JN837695.1 |
| Species | RVC | Sequence Length | 6675 nt |
| Serotype | 2 Checked by RVdb | Serotype (GenBank) | 2 |
| Definition | Human rhinovirus C strain HRV-C02_p1163_sR2897_2009_g1 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C02_p1163_sR2897_2009_g1 | Sampling Date | 2009-04-26 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC021396 | 1A (VP4) | 356 | 556 | 0 | 0 | 201 | |
| SQC021397 | 1B (VP2) | 557 | 1342 | 0 | 0 | 786 | |
| SQC021398 | 1C (VP3) | 1343 | 2053 | 0 | 0 | 711 | |
| SQC021399 | 1D (VP1) | 2054 | 2866 | 0 | 0 | 813 | |
| SQC021400 | 2A (P2-A) | 2867 | 3292 | 0 | 0 | 426 | |
| SQC021401 | 2B (P2-B) | 3293 | 3589 | 0 | 0 | 297 | |
| SQC021402 | 2C (P2-C) | 3590 | 4567 | 0 | 0 | 978 | |
| SQC021403 | 3A (P3-A) | 4568 | 4792 | 0 | 0 | 225 | |
| SQC021404 | 3B (VPg) | 4793 | 4858 | 0 | 0 | 66 | |
| SQC021405 | 3D | 5408 | 0 | 0 | 1 | 1268 | |
| SQC021406 | CDS | 356 | 0 | 0 | 1 | 6320 | |
| SQC021407 | protease 3C | 4859 | 5407 | 0 | 0 | 549 | |
| SQC021408 | VP4/2 | 356 | 786 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002621 | CDS | 1 | 2107 | 0 | 0 | 2107 | |
| SPC002622 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002623 | 3D | 1685 | 2107 | 0 | 1 | 423 | |
| SPC002624 | 2C (P2-C) | 1079 | 1404 | 0 | 0 | 326 | |
| SPC002625 | 1D (VP1) | 567 | 837 | 0 | 0 | 271 | |
| SPC002626 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC002627 | 1C (VP3) | 330 | 566 | 0 | 0 | 237 | |
| SPC002628 | protease 3C | 1502 | 1684 | 0 | 0 | 183 | |
| SPC002629 | 2A (P2-A) | 838 | 979 | 0 | 0 | 142 | |
| SPC002630 | 2B (P2-B) | 980 | 1078 | 0 | 0 | 99 | |
| SPC002631 | 3A (P3-A) | 1405 | 1479 | 0 | 0 | 75 | |
| SPC002632 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002633 | 3B (VPg) | 1480 | 1501 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |