| RVdb StrainID | CNZ04756 | GenBank Accession | JN837686.2 |
| Species | RVC | Sequence Length | 7087 nt |
| Serotype | 45 Checked by RVdb | Serotype (GenBank) | 45 |
| Definition | Rhinovirus C strain HRV-C45_p1084_s3920_2000 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C45_p1084_s3920_2000 | Sampling Date | 2000 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC021409 | 1A (VP4) | 603 | 803 | 0 | 0 | 201 | |
| SQC021410 | 1B (VP2) | 804 | 1595 | 0 | 0 | 792 | |
| SQC021411 | 1C (VP3) | 1596 | 2309 | 0 | 0 | 714 | |
| SQC021412 | 1D (VP1) | 2310 | 3128 | 0 | 0 | 819 | |
| SQC021413 | 2A (P2-A) | 3129 | 3554 | 0 | 0 | 426 | |
| SQC021414 | 2B (P2-B) | 3555 | 3851 | 0 | 0 | 297 | |
| SQC021415 | 2C (P2-C) | 3852 | 4829 | 0 | 0 | 978 | |
| SQC021416 | 3'UTR | 7053 | 0 | 0 | 1 | 35 | |
| SQC021417 | 3A (P3-A) | 4830 | 5054 | 0 | 0 | 225 | |
| SQC021418 | 3B (VPg) | 5055 | 5120 | 0 | 0 | 66 | |
| SQC021419 | 3D | 5670 | 7049 | 0 | 0 | 1380 | |
| SQC021420 | 5'UTR | 1 | 602 | 0 | 0 | 602 | |
| SQC021421 | CDS | 603 | 7052 | 0 | 0 | 6450 | |
| SQC021422 | protease 3C | 5121 | 5669 | 0 | 0 | 549 | |
| SQC021423 | VP4/2 | 603 | 1033 | 0 | 0 | 431 | |
| SQC021424 | genome | 1 | 7087 | 0 | 1 | 7087 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002558 | CDS | 1 | 2149 | 0 | 0 | 2149 | |
| SPC002559 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002560 | 3D | 1690 | 2149 | 0 | 0 | 460 | |
| SPC002561 | 2C (P2-C) | 1084 | 1409 | 0 | 0 | 326 | |
| SPC002562 | 1D (VP1) | 570 | 842 | 0 | 0 | 273 | |
| SPC002563 | 1B (VP2) | 68 | 331 | 0 | 0 | 264 | |
| SPC002564 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPC002565 | protease 3C | 1507 | 1689 | 0 | 0 | 183 | |
| SPC002566 | 2A (P2-A) | 843 | 984 | 0 | 0 | 142 | |
| SPC002567 | 2B (P2-B) | 985 | 1083 | 0 | 0 | 99 | |
| SPC002568 | 3A (P3-A) | 1410 | 1484 | 0 | 0 | 75 | |
| SPC002569 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002570 | 3B (VPg) | 1485 | 1506 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |