| RVdb StrainID | CNZ04761 | GenBank Accession | JN815245.1 |
| Species | RVC | Sequence Length | 6528 nt |
| Serotype | 6 Checked by RVdb | Serotype (GenBank) | 6 |
| Definition | Human rhinovirus C strain HRV-C06_p1264_s3778_1999 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C06_p1264_s3778_1999 | Sampling Date | 1999-12-11 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC021425 | 1A (VP4) | 170 | 370 | 0 | 0 | 201 | |
| SQC021426 | 1B (VP2) | 371 | 1156 | 0 | 0 | 786 | |
| SQC021427 | 1C (VP3) | 1157 | 1855 | 0 | 0 | 699 | |
| SQC021428 | 1D (VP1) | 1856 | 2680 | 0 | 0 | 825 | |
| SQC021429 | 2A (P2-A) | 2681 | 3109 | 0 | 0 | 429 | |
| SQC021430 | 2B (P2-B) | 3110 | 3400 | 0 | 0 | 291 | |
| SQC021431 | 2C (P2-C) | 3401 | 4375 | 0 | 0 | 975 | |
| SQC021432 | 3A (P3-A) | 4376 | 4603 | 0 | 0 | 228 | |
| SQC021433 | 3B (VPg) | 4604 | 4669 | 0 | 0 | 66 | |
| SQC021434 | 3D | 5219 | 0 | 0 | 1 | 1310 | |
| SQC021435 | CDS | 170 | 0 | 0 | 1 | 6359 | |
| SQC021436 | protease 3C | 4670 | 5218 | 0 | 0 | 549 | |
| SQC021437 | VP4/2 | 170 | 600 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002660 | CDS | 1 | 2119 | 0 | 0 | 2119 | |
| SPC002661 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002662 | 3D | 1684 | 2119 | 0 | 1 | 436 | |
| SPC002663 | 2C (P2-C) | 1078 | 1402 | 0 | 0 | 325 | |
| SPC002664 | 1D (VP1) | 563 | 837 | 0 | 0 | 275 | |
| SPC002665 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC002666 | 1C (VP3) | 330 | 562 | 0 | 0 | 233 | |
| SPC002667 | protease 3C | 1501 | 1683 | 0 | 0 | 183 | |
| SPC002668 | 2A (P2-A) | 838 | 980 | 0 | 0 | 143 | |
| SPC002669 | 2B (P2-B) | 981 | 1077 | 0 | 0 | 97 | |
| SPC002670 | 3A (P3-A) | 1403 | 1478 | 0 | 0 | 76 | |
| SPC002671 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002672 | 3B (VPg) | 1479 | 1500 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |