| RVdb StrainID | CNZ04616 | GenBank Accession | JQ994495.1 |
| Species | RVC | Sequence Length | 6215 nt |
| Serotype | 7 Checked by RVdb | Serotype (GenBank) | 7 |
| Definition | Human rhinovirus C strain HRV-C07_p1028_sR3258_2010 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C07_p1028_sR3258_2010 | Sampling Date | 2010 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | -N/A- | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.2.01 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC021323 | 1A (VP4) | 306 | 506 | 0 | 0 | 201 | |
| SQC021324 | 1B (VP2) | 507 | 1295 | 0 | 0 | 789 | |
| SQC021325 | 1C (VP3) | 1296 | 1991 | 0 | 0 | 696 | |
| SQC021326 | 1D (VP1) | 1992 | 2807 | 0 | 0 | 816 | |
| SQC021327 | 2A (P2-A) | 2808 | 3233 | 0 | 0 | 426 | |
| SQC021328 | 2B (P2-B) | 3234 | 3524 | 0 | 0 | 291 | |
| SQC021329 | 2C (P2-C) | 3525 | 4499 | 0 | 0 | 975 | |
| SQC021330 | 3A (P3-A) | 4500 | 4727 | 0 | 0 | 228 | |
| SQC021331 | 3B (VPg) | 4728 | 4793 | 0 | 0 | 66 | |
| SQC021332 | 3D | 5343 | 0 | 0 | 1 | 873 | |
| SQC021333 | CDS | 306 | 0 | 0 | 1 | 5910 | |
| SQC021334 | protease 3C | 4794 | 5342 | 0 | 0 | 549 | |
| SQC021335 | VP4/2 | 306 | 736 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC003305 | CDS | 1 | 1970 | 0 | 0 | 1970 | |
| SPC003306 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC003307 | 2C (P2-C) | 1074 | 1398 | 0 | 0 | 325 | |
| SPC003308 | 3D | 1680 | 1970 | 0 | 1 | 291 | |
| SPC003309 | 1D (VP1) | 563 | 834 | 0 | 0 | 272 | |
| SPC003310 | 1B (VP2) | 68 | 330 | 0 | 0 | 263 | |
| SPC003311 | 1C (VP3) | 331 | 562 | 0 | 0 | 232 | |
| SPC003312 | protease 3C | 1497 | 1679 | 0 | 0 | 183 | |
| SPC003313 | 2A (P2-A) | 835 | 976 | 0 | 0 | 142 | |
| SPC003314 | 2B (P2-B) | 977 | 1073 | 0 | 0 | 97 | |
| SPC003315 | 3A (P3-A) | 1399 | 1474 | 0 | 0 | 76 | |
| SPC003316 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC003317 | 3B (VPg) | 1475 | 1496 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |