| RVdb StrainID | CNP04727 | GenBank Accession | JQ245964.1 |
| Species | RVC | Sequence Length | 6459 nt |
| Serotype | 8 Checked by RVdb | Serotype (GenBank) | 8 |
| Definition | Human rhinovirus C strain HRV-C08_p1211_sR3055_2009 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C08_p1211_sR3055_2009 | Sampling Date | 2009 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | -N/A- | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC012344 | 1A (VP4) | 262 | 462 | 0 | 0 | 201 | |
| SQC012345 | 1B (VP2) | 463 | 1248 | 0 | 0 | 786 | |
| SQC012346 | 1C (VP3) | 1249 | 1956 | 0 | 0 | 708 | |
| SQC012347 | 1D (VP1) | 1957 | 2784 | 0 | 0 | 828 | |
| SQC012348 | 2A (P2-A) | 2785 | 3210 | 0 | 0 | 426 | |
| SQC012349 | 2B (P2-B) | 3211 | 3507 | 0 | 0 | 297 | |
| SQC012350 | 2C (P2-C) | 3508 | 4485 | 0 | 0 | 978 | |
| SQC012351 | 3A (P3-A) | 4486 | 4710 | 0 | 0 | 225 | |
| SQC012352 | 3B (VPg) | 4711 | 4776 | 0 | 0 | 66 | |
| SQC012353 | 3D | 5326 | 0 | 0 | 1 | 1134 | |
| SQC012354 | CDS | 262 | 0 | 0 | 1 | 6198 | |
| SQC012355 | protease 3C | 4777 | 5325 | 0 | 0 | 549 | |
| SQC012356 | VP4/2 | 262 | 692 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002764 | CDS | 1 | 2066 | 0 | 0 | 2066 | |
| SPC002765 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002766 | 3D | 1689 | 2066 | 0 | 1 | 378 | |
| SPC002767 | 2C (P2-C) | 1083 | 1408 | 0 | 0 | 326 | |
| SPC002768 | 1D (VP1) | 566 | 841 | 0 | 0 | 276 | |
| SPC002769 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC002770 | 1C (VP3) | 330 | 565 | 0 | 0 | 236 | |
| SPC002771 | protease 3C | 1506 | 1688 | 0 | 0 | 183 | |
| SPC002772 | 2A (P2-A) | 842 | 983 | 0 | 0 | 142 | |
| SPC002773 | 2B (P2-B) | 984 | 1082 | 0 | 0 | 99 | |
| SPC002774 | 3A (P3-A) | 1409 | 1483 | 0 | 0 | 75 | |
| SPC002775 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002776 | 3B (VPg) | 1484 | 1505 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |