| RVdb StrainID | CNC04619 | GenBank Accession | JQ837720.1 |
| Species | RVC | Sequence Length | 6757 nt |
| Serotype | 17 Checked by RVdb | Serotype (GenBank) | 17 |
| Definition | Human rhinovirus C strain HRV-C17_p1192_sR2967_2009 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C17_p1192_sR2967_2009 | Sampling Date | 2009 |
| Sampling Country | USA | Sampling location | -N/A- |
| Isolation Source | -N/A- | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.06 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC003320 | 1A (VP4) | 364 | 564 | 0 | 0 | 201 | |
| SQC003321 | 1B (VP2) | 565 | 1347 | 0 | 0 | 783 | |
| SQC003322 | 1C (VP3) | 0 | 1938 | 1 | 0 | 378 | |
| SQC003323 | 1D (VP1) | 1939 | 2766 | 0 | 0 | 828 | |
| SQC003324 | 2A (P2-A) | 2767 | 3192 | 0 | 0 | 426 | |
| SQC003325 | 2B (P2-B) | 3193 | 3489 | 0 | 0 | 297 | |
| SQC003326 | 2C (P2-C) | 3490 | 4467 | 0 | 0 | 978 | |
| SQC003327 | 3A (P3-A) | 4468 | 4692 | 0 | 0 | 225 | |
| SQC003328 | 3B (VPg) | 4693 | 4758 | 0 | 0 | 66 | |
| SQC003329 | 3D | 5308 | 6687 | 0 | 0 | 1380 | |
| SQC003330 | CDS | 364 | 6690 | 0 | 0 | 6327 | |
| SQC003331 | protease 3C | 4759 | 5307 | 0 | 0 | 549 | |
| SQC003332 | VP4/2 | 364 | 794 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC003290 | CDS | 1 | 2108 | 0 | 0 | 2108 | |
| SPC003291 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC003292 | 3D | 1649 | 2108 | 0 | 0 | 460 | |
| SPC003293 | 2C (P2-C) | 1043 | 1368 | 0 | 0 | 326 | |
| SPC003294 | 1D (VP1) | 526 | 801 | 0 | 0 | 276 | |
| SPC003295 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC003296 | protease 3C | 1466 | 1648 | 0 | 0 | 183 | |
| SPC003297 | 2A (P2-A) | 802 | 943 | 0 | 0 | 142 | |
| SPC003298 | 1C (VP3) | 400 | 525 | 1 | 0 | 126 | |
| SPC003299 | 2B (P2-B) | 944 | 1042 | 0 | 0 | 99 | |
| SPC003300 | 3A (P3-A) | 1369 | 1443 | 0 | 0 | 75 | |
| SPC003301 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC003302 | 3B (VPg) | 1444 | 1465 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |