| RVdb StrainID | CNM04735 | GenBank Accession | JN990702.1 |
| Species | RVC | Sequence Length | 7092 nt |
| Serotype | 6 Checked by RVdb | Serotype (GenBank) | 6 |
| Definition | Human rhinovirus C strain HRV-C06_p1031_sR2724_2009 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C06_p1031_sR2724_2009 | Sampling Date | 2009 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | -N/A- | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC007858 | 1A (VP4) | 611 | 811 | 0 | 0 | 201 | |
| SQC007859 | 1B (VP2) | 812 | 1597 | 0 | 0 | 786 | |
| SQC007860 | 1C (VP3) | 1598 | 2296 | 0 | 0 | 699 | |
| SQC007861 | 1D (VP1) | 2297 | 3121 | 0 | 0 | 825 | |
| SQC007862 | 2A (P2-A) | 3122 | 3547 | 0 | 0 | 426 | |
| SQC007863 | 2B (P2-B) | 3548 | 3838 | 0 | 0 | 291 | |
| SQC007864 | 2C (P2-C) | 3839 | 4813 | 0 | 0 | 975 | |
| SQC007865 | 3'UTR | 7040 | 0 | 0 | 1 | 46 | |
| SQC007866 | 3A (P3-A) | 4814 | 5041 | 0 | 0 | 228 | |
| SQC007867 | 3B (VPg) | 5042 | 5107 | 0 | 0 | 66 | |
| SQC007868 | 3D | 5657 | 7036 | 0 | 0 | 1380 | |
| SQC007869 | 5'UTR | 0 | 610 | 1 | 0 | 610 | |
| SQC007870 | CDS | 611 | 7039 | 0 | 0 | 6429 | |
| SQC007871 | protease 3C | 5108 | 5656 | 0 | 0 | 549 | |
| SQC007872 | VP4/2 | 611 | 1041 | 0 | 0 | 431 | |
| SQC007873 | genome | 1 | 7092 | 1 | 1 | 7092 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002725 | CDS | 1 | 2142 | 0 | 0 | 2142 | |
| SPC002726 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002727 | 3D | 1683 | 2142 | 0 | 0 | 460 | |
| SPC002728 | 2C (P2-C) | 1077 | 1401 | 0 | 0 | 325 | |
| SPC002729 | 1D (VP1) | 563 | 837 | 0 | 0 | 275 | |
| SPC002730 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC002731 | 1C (VP3) | 330 | 562 | 0 | 0 | 233 | |
| SPC002732 | protease 3C | 1500 | 1682 | 0 | 0 | 183 | |
| SPC002733 | 2A (P2-A) | 838 | 979 | 0 | 0 | 142 | |
| SPC002734 | 2B (P2-B) | 980 | 1076 | 0 | 0 | 97 | |
| SPC002735 | 3A (P3-A) | 1402 | 1477 | 0 | 0 | 76 | |
| SPC002736 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002737 | 3B (VPg) | 1478 | 1499 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |