RVdb-Rhinovirus Database

Nucleotide - Nucleotide Input a query sequence (fasta format):

Important note:

1.Please make sure the sequence you input is a nucleic acid sequence.

2.Please make sure the sequence you input is in fasta format.

Import Example

Expect threshold

Number of sequences to show alignments for

Word size

Low complexity filter

Perform ungapped alignment

Protein - Protein Input a query sequence (fasta format):

Important note:

1.Please make sure the sequence you input is a amino acid sequence.

2.Please make sure the sequence you input is in fasta format.

Import Example

Expect threshold

Number of sequences to show alignments for

Word size

Matrix

Low complexity filter

Perform ungapped alignment

Translated Query - Protein Subject Input a query sequence (fasta format):

Important note:

1.Please make sure the sequence you input is a amino acid sequence.

2.Please make sure the sequence you input is in fasta format.

Import Example

Expect threshold

Number of sequences to show alignments for

Word size

Matrix

Low complexity filter

Perform ungapped alignment

Protein Query - Translated Subject Input a query sequence (fasta format):

Important note:

1.Please make sure the sequence you input is a amino acid sequence.

2.Please make sure the sequence you input is in fasta format.

Import Example

Expect threshold

Number of sequences to show alignments for

Word size

Matrix

Low complexity filter

Perform ungapped alignment

Translated Query - Translated Subject Input a query sequence (fasta format):

Important note:

1.Please make sure the sequence you input is a amino acid sequence.

2.Please make sure the sequence you input is in fasta format.

Import Example

Expect threshold

Number of sequences to show alignments for

Word size

Matrix

Low complexity filter