| RVdb StrainID | CNM04725 | GenBank Accession | JQ245973.1 |
| Species | RVC | Sequence Length | 6272 nt |
| Serotype | 8 Checked by RVdb | Serotype (GenBank) | 8 |
| Definition | Human rhinovirus C strain HRV-C08_p1192_sR2962_2008 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C08_p1192_sR2962_2008 | Sampling Date | 2008 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | -N/A- | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.06 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC007844 | 1A (VP4) | 337 | 537 | 0 | 0 | 201 | |
| SQC007845 | 1B (VP2) | 538 | 1323 | 0 | 0 | 786 | |
| SQC007846 | 1C (VP3) | 1324 | 2031 | 0 | 0 | 708 | |
| SQC007847 | 1D (VP1) | 2032 | 2859 | 0 | 0 | 828 | |
| SQC007848 | 2A (P2-A) | 2860 | 3285 | 0 | 0 | 426 | |
| SQC007849 | 2B (P2-B) | 3286 | 3582 | 0 | 0 | 297 | |
| SQC007850 | 2C (P2-C) | 3583 | 4560 | 0 | 0 | 978 | |
| SQC007851 | 3A (P3-A) | 4561 | 4785 | 0 | 0 | 225 | |
| SQC007852 | 3B (VPg) | 4786 | 4851 | 0 | 0 | 66 | |
| SQC007853 | 3D | 5401 | 0 | 0 | 1 | 872 | |
| SQC007854 | CDS | 337 | 0 | 0 | 1 | 5936 | |
| SQC007855 | protease 3C | 4852 | 5400 | 0 | 0 | 549 | |
| SQC007856 | VP4/2 | 337 | 767 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002790 | CDS | 1 | 1979 | 0 | 0 | 1979 | |
| SPC002791 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002792 | 2C (P2-C) | 1083 | 1408 | 0 | 0 | 326 | |
| SPC002793 | 3D | 1689 | 1979 | 0 | 1 | 291 | |
| SPC002794 | 1D (VP1) | 566 | 841 | 0 | 0 | 276 | |
| SPC002795 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC002796 | 1C (VP3) | 330 | 565 | 0 | 0 | 236 | |
| SPC002797 | protease 3C | 1506 | 1688 | 0 | 0 | 183 | |
| SPC002798 | 2A (P2-A) | 842 | 983 | 0 | 0 | 142 | |
| SPC002799 | 2B (P2-B) | 984 | 1082 | 0 | 0 | 99 | |
| SPC002800 | 3A (P3-A) | 1409 | 1483 | 0 | 0 | 75 | |
| SPC002801 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002802 | 3B (VPg) | 1484 | 1505 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |