| RVdb StrainID | CNS04613 | GenBank Accession | JX025556.1 |
| Species | RVC | Sequence Length | 6432 nt |
| Serotype | 7 Checked by RVdb | Serotype (GenBank) | 7 |
| Definition | Human rhinovirus C strain HRV-C07_p1008_sR2525_2009 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C07_p1008_sR2525_2009 | Sampling Date | 2009 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | -N/A- | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC016754 | 1A (VP4) | 140 | 340 | 0 | 0 | 201 | |
| SQC016755 | 1B (VP2) | 341 | 1126 | 0 | 0 | 786 | |
| SQC016756 | 1C (VP3) | 1127 | 1828 | 0 | 0 | 702 | |
| SQC016757 | 1D (VP1) | 1829 | 2644 | 0 | 0 | 816 | |
| SQC016758 | 2A (P2-A) | 2645 | 3070 | 0 | 0 | 426 | |
| SQC016759 | 2B (P2-B) | 3071 | 3361 | 0 | 0 | 291 | |
| SQC016760 | 2C (P2-C) | 3362 | 4336 | 0 | 0 | 975 | |
| SQC016761 | 3A (P3-A) | 4337 | 4564 | 0 | 0 | 228 | |
| SQC016762 | 3B (VPg) | 4565 | 4630 | 0 | 0 | 66 | |
| SQC016763 | 3D | 5180 | 0 | 0 | 1 | 1253 | |
| SQC016764 | CDS | 140 | 0 | 0 | 1 | 6293 | |
| SQC016765 | protease 3C | 4631 | 5179 | 0 | 0 | 549 | |
| SQC016766 | VP4/2 | 140 | 570 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC003344 | CDS | 1 | 2097 | 0 | 0 | 2097 | |
| SPC003345 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC003346 | 3D | 1681 | 2097 | 0 | 1 | 417 | |
| SPC003347 | 2C (P2-C) | 1075 | 1399 | 0 | 0 | 325 | |
| SPC003348 | 1D (VP1) | 564 | 835 | 0 | 0 | 272 | |
| SPC003349 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC003350 | 1C (VP3) | 330 | 563 | 0 | 0 | 234 | |
| SPC003351 | protease 3C | 1498 | 1680 | 0 | 0 | 183 | |
| SPC003352 | 2A (P2-A) | 836 | 977 | 0 | 0 | 142 | |
| SPC003353 | 2B (P2-B) | 978 | 1074 | 0 | 0 | 97 | |
| SPC003354 | 3A (P3-A) | 1400 | 1475 | 0 | 0 | 76 | |
| SPC003355 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC003356 | 3B (VPg) | 1476 | 1497 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |