PMID Title Journal Publication Year Author View in RVdb
25028608 Characterization of the nasopharyngeal microbiota in health and during rhinovirus challenge. Microbiome 2014 Allen EK;Koeppel AF;Hendley JO;Turner SD;Winther B;Sale MM View More
25286177 Sequencing human rhinoviruses: direct sequencing versus plasmid cloning. J Virol Methods 2015 Linder JE;Plachco TE;Libster R;Miller EK View More
25354781 Association mapping of disease resistance traits in rainbow trout using restriction site associated DNA sequencing. G3 (Bethesda) 2014 Campbell NR;LaPatra SE;Overturf K;Towner R;Narum SR View More
25542461 The emergence of enterovirus D68 in a Dutch University Medical Center and the necessity for routinely screening for respiratory viruses. J Clin Virol 2015 Poelman R;Scholvinck EH;Borger R;Niesters HG;van Leer-Buter C View More
25556759 Human rhinovirus serotypes in the nasal washes and mucosa of patients with chronic rhinosinusitis. Int Forum Allergy Rhinol 2015 Lee SB;Yi JS;Lee BJ;Gong CH;Kim NH;Joo CH;Jang YJ View More
25866327 Direct multiplexed whole genome sequencing of respiratory tract samples reveals full viral genomic information. J Clin Virol 2015 Zoll J;Rahamat-Langendoen J;Ahout I;de Jonge MI;Jans J;Huijnen MA;Ferwerda G;Warris A;Melchers WJ View More
25972105 Coexistence of two clades of enterovirus D68 in pediatric Swedish patients in the summer and fall of 2014. Infect Dis (Lond) 2015 Dyrdak R;Rotzen-Ostlund M;Samuelson A;Eriksson M;Albert J View More
26231254 Unbiased metagenomic sequencing complements specific routine diagnostic methods and increases chances to detect rare viral strains. Diagn Microbiol Infect Dis 2015 Lewandowska DW;Zagordi O;Zbinden A;Schuurmans MM;Schreiber P;Geissberger FD;Huder JB;Boni J;Benden C;Mueller NJ;Trkola A;Huber M View More
27232888 Rhinovirus species and clinical characteristics in the first wheezing episode in children. J Med Virol 2016 Turunen R;Jartti T;Bochkov YA;Gern JE;Vuorinen T View More
27822536 A Universal Next-Generation Sequencing Protocol To Generate Noninfectious Barcoded cDNA Libraries from High-Containment RNA Viruses. mSystems 2016 Moser LA;Ramirez-Carvajal L;Puri V;Pauszek SJ;Matthews K;Dilley KA;Mullan C;McGraw J;Khayat M;Beeri K;Yee A;Dugan V;Heise MT;Frieman MB;Rodriguez LL;Bernard KA;Wentworth DE;Stockwell TB;Shabman RS View More
27921234 Simultaneous virus identification and characterization of severe unexplained pneumonia cases using a metagenomics sequencing technique. Sci China Life Sci 2017 Zou X;Tang G;Zhao X;Huang Y;Chen T;Lei M;Chen W;Yang L;Zhu W;Zhuang L;Yang J;Feng Z;Wang D;Wang D;Shu Y View More
28165146 Enterovirus D68 detection in respiratory specimens: Association with severe disease. J Med Virol 2017 Engelmann I;Fatoux M;Lazrek M;Alidjinou EK;Mirand A;Henquell C;Dewilde A;Hober D View More
28331089 Diversity, Distribution, and Evolution of Tomato Viruses in China Uncovered by Small RNA Sequencing. J Virol 2017 Xu C;Sun X;Taylor A;Jiao C;Xu Y;Cai X;Wang X;Ge C;Pan G;Wang Q;Fei Z;Wang Q View More
28368491 Viral Pathogen Detection by Metagenomics and Pan-Viral Group Polymerase Chain Reaction in Children With Pneumonia Lacking Identifiable Etiology. J Infect Dis 2017 Schlaberg R;Queen K;Simmon K;Tardif K;Stockmann C;Flygare S;Kennedy B;Voelkerding K;Bramley A;Zhang J;Eilbeck K;Yandell M;Jain S;Pavia AT;Tong S;Ampofo K View More
28379561 Rule-Out Outbreak: 24-Hour Metagenomic Next-Generation Sequencing for Characterizing Respiratory Virus Source for Infection Prevention. J Pediatric Infect Dis Soc 2017 Greninger AL;Waghmare A;Adler A;Qin X;Crowley JL;Englund JA;Kuypers JM;Jerome KR;Zerr DM View More
28630939 Retrospective Surveillance of Wastewater To Examine Seasonal Dynamics of Enterovirus Infections. mSphere 2017 Brinkman NE;Fout GS;Keely SP View More
28779659 Retrospective use of next-generation sequencing reveals the presence of Enteroviruses in acute influenza-like illness respiratory samples collected in South/South-East Asia during 2010-2013. J Clin Virol 2017 Rutvisuttinunt W;Klungthong C;Thaisomboonsuk B;Chinnawirotpisan P;Ajariyakhajorn C;Manasatienkij W;Phonpakobsin T;Lon C;Saunders D;Wangchuk S;Shrestha SK;Velasco JMS;Alera MTP;Simasathien S;Buddhari D;Jarman RG;Macareo LR;Yoon IK;Fernandez S View More
28852711 Enterovirus D68 in Viet Nam (2009-2015). Wellcome Open Res 2017 Ny NTH;Anh NT;Hang VTT;Nguyet LA;Thanh TT;Ha DQ;Minh NNQ;Ha DLA;McBride A;Tuan HM;Baker S;Tam PTT;Phuc TM;Huong DT;Loi TQ;Vu NTA;Hung NV;Minh TTT;Xang NV;Dong N;Nghia HDT;Chau NVV;Thwaites G;van Doorn HR;Anscombe C;Le Van T View More
30323802 Whole Genome Sequencing of Enteroviruses Species A to D by High-Throughput Sequencing: Application for Viral Mixtures. Front Microbiol 2018 Joffret ML;Polston PM;Razafindratsimandresy R;Bessaud M;Heraud JM;Delpeyroux F View More
31189707 Effect of Geographic Isolation on the Nasal Virome of Indigenous Children. J Virol 2019 Altan E;Dib JC;Gulloso AR;Escribano Juandigua D;Deng X;Bruhn R;Hildebrand K;Freiden P;Yamamoto J;Schultz-Cherry S;Delwart E View More
31217053 Next-generation Sequencing Study of Pathogens in Serum from Patients with Febrile Jaundice in Sierra Leone. Biomed Environ Sci 2019 Zhang Y;Ye F;Xia LX;Zhu LW;Kamara IL;Huang KQ;Zhang Y;Liu J;Kargbo B;Wang J;Liang MF;Song JD;Ma XJ;Wu GZ View More
31623340 An Emerging Human Parechovirus Type 5 Causing Sepsis-Like Illness in Infants in Australia. Viruses 2019 Chamings A;Liew KC;Reid E;Athan E;Raditsis A;Vuillermin P;Yoga Y;Caly L;Druce J;Alexandersen S View More
31882450 A rapid and label-free platform for virus capture and identification from clinical samples. Proc Natl Acad Sci U S A 2020 Yeh YT;Gulino K;Zhang Y;Sabestien A;Chou TW;Zhou B;Lin Z;Albert I;Lu H;Swaminathan V;Ghedin E;Terrones M View More
31921732 Identification of Viral Signatures Using High-Throughput Sequencing on Blood of Patients With Kawasaki Disease. Front Pediatr 2019 L'Huillier AG;Brito F;Wagner N;Cordey S;Zdobnov E;Posfay-Barbe KM;Kaiser L View More
31996093 Discovery of a subgenotype of human coronavirus NL63 associated with severe lower respiratory tract infection in China, 2018. Emerg Microbes Infect 2020 Wang Y;Li X;Liu W;Gan M;Zhang L;Wang J;Zhang Z;Zhu A;Li F;Sun J;Zhang G;Zhuang Z;Luo J;Chen D;Qiu S;Zhang L;Xu D;Mok CKP;Zhang F;Zhao J;Zhou R;Zhao J View More
32493783 Biennial Upsurge and Molecular Epidemiology of Enterovirus D68 Infection in New York, USA, 2014 to 2018. J Clin Microbiol 2020 Gilrane VL;Zhuge J;Huang W;Nolan SM;Dhand A;Yin C;Salib C;Shakil F;Engel H;Fallon JT;Wang G View More
32496715 [Etiology of epidemic outbreaks COVID-19 on Wuhan, Hubei province, Chinese People Republic associated with 2019-nCoV (Nidovirales, Coronaviridae, Coronavirinae, Betacoronavirus, Subgenus Sarbecovirus): lessons of SARS-CoV outbreak.]. Vopr Virusol 2020 Lvov DK;Alkhovsky SV;Kolobukhina LV;Burtseva EI View More
32499763 Epidemiology and Phylogenetic Analysis of Viral Respiratory Infections in Vietnam. Front Microbiol 2020 Lu L;Robertson G;Ashworth J;Pham Hong A;Shi T;Ivens A;Thwaites G;Baker S;Woolhouse M View More
32499788 Airway Epithelial Cell Immunity Is Delayed During Rhinovirus Infection in Asthma and COPD. Front Immunol 2020 Veerati PC;Troy NM;Reid AT;Li NF;Nichol KS;Kaur P;Maltby S;Wark PAB;Knight DA;Bosco A;Grainge CL;Bartlett NW View More
33170499 Etiology of Severe Community-Acquired Pneumonia in Adults Based on Metagenomic Next-Generation Sequencing: A Prospective Multicenter Study. Infect Dis Ther 2020 Wu X;Li Y;Zhang M;Li M;Zhang R;Lu X;Gao W;Li Q;Xia Y;Pan P;Li Q View More
33281758 Broad Virus Detection and Variant Discovery in Fecal Samples of Hematopoietic Transplant Recipients Using Targeted Sequence Capture Metagenomics. Front Microbiol 2020 Jansen SA;Nijhuis W;Leavis HL;Riezebos-Brilman A;Lindemans CA;Schuurman R View More
33918088 Detection and Typing of Human Enteroviruses from Clinical Samples by Entire-Capsid Next Generation Sequencing. Viruses 2021 Majumdar M;Celma C;Pegg E;Polra K;Dunning J;Martin J View More
33929935 Blood virosphere in febrile Tanzanian children. Emerg Microbes Infect 2021 Cordey S;Laubscher F;Hartley MA;Junier T;Keitel K;Docquier M;Guex N;Iseli C;Vieille G;Le Mercier P;Gleizes A;Samaka J;Mlaganile T;Kagoro F;Masimba J;Said Z;Temba H;Elbanna GH;Tapparel C;Zanella MC;Xenarios I;Fellay J;D'Acremont V;Kaiser L View More
34522789 Whole genome sequencing of two human rhinovirus A types (A101 and A15) detected in Kenya, 2016-2018. Wellcome Open Res 2021 Luka MM;Kamau E;de Laurent ZR;Morobe JM;Alii LK;Nokes DJ;Agoti CN View More
34546782 First Report of Bean common mosaic virus Infecting Heavenly Bamboo (Nandina domestica) in China. Plant Dis 2022 Su X;Zhou X;Li Y;Ma L;Cheng X;Guo K View More
34787455 Temporal and Gene Reassortment Analysis of Influenza C Virus Outbreaks in Hong Kong, SAR, China. J Virol 2022 Daniels RS;Galiano M;Ermetal B;Kwong J;Lau CS;Xiang Z;McCauley JW;Lo J View More
35033134 Cold case: The disappearance of Egypt bee virus, a fourth distinct master strain of deformed wing virus linked to honeybee mortality in 1970\'s Egypt. Virol J 2022 de Miranda JR;Brettell LE;Chejanovsky N;Childers AK;Dalmon A;Deboutte W;de Graaf DC;Doublet V;Gebremedhn H;Genersch E;Gisder S;Granberg F;Haddad NJ;Kaden R;Manley R;Matthijnssens J;Meeus I;Migdadi H;Milbrath MO;Mondet F;Remnant EJ;Roberts JMK;Ryabov EV;Sela N;Smagghe G;Somanathan H;Wilfert L;Wright ON;Martin SJ;Ball BV View More
35367470 Epithelial cell responses to rhinovirus identify an early-life-onset asthma phenotype in adults. J Allergy Clin Immunol 2022 Chang EH;Pouladi N;Guerra S;Jandova J;Kim A;Li H;Li J;Morgan W;Stern DA;Willis AL;Lussier YA;Martinez FD View More
35695488 Evaluation of Metagenomic and Targeted Next-Generation Sequencing Workflows for Detection of Respiratory Pathogens from Bronchoalveolar Lavage Fluid Specimens. J Clin Microbiol 2022 Gaston DC;Miller HB;Fissel JA;Jacobs E;Gough E;Wu J;Klein EY;Carroll KC;Simner PJ View More
36168937 Surveillance of rhinovirus diversity among a university community identifies multiple types from all three species including an unassigned rhinovirus A genotype. Influenza Other Respir Viruses 2022 Faleye TOC;Elyaderani A;Skidmore P;Adhikari S;Smith A;Kaiser N;Sandrolini H;Finnerty S;Halden RU;Varsani A;Scotch M View More
36203558 Impact of sample clarification by size exclusion on virus detection and diversity in wastewater-based epidemiology. medRxiv 2022 Faleye TOC;Skidmore P;Elyaderani A;Adhikari S;Kaiser N;Smith A;Yanez A;Perleberg T;Driver EM;Halden RU;Varsani A;Scotch M View More
36389175 Diagnostic value of bronchoalveolar lavage fluid metagenomic next-generation sequencing in pediatric pneumonia. Front Cell Infect Microbiol 2022 Deng W;Xu H;Wu Y;Li J View More
36494960 GENETIC DIVERSITY OF ADENOVIRUSES CIRCULATING AMONG THE MILITARY IN THE NORTH-WEST REGION. Vopr Virusol 2017 Amosova IV;Timoshicheva TA;Egorova AA;Musaeva TD;Pisareva MM;Eder VA;Lvov NI View More
36508145 Full genome sequence of a novel iflavirus from the aster leafhopper Macrosteles fascifrons. Virus Genes 2023 Xiao J;Zhu K;Ma R;Zhang C;Lv K;Ge D;Liu R View More
36805803 Clinical Evaluation of Metagenomic Next-Generation Sequencing for the detection of pathogens in BALF in severe community acquired pneumonia. Ital J Pediatr 2023 Wei Y;Zhang T;Ma Y;Yan J;Zhan J;Zheng J;Xu Y View More
37373604 Etiologies of Acute Bronchiolitis in Children at Risk for Asthma, with Emphasis on the Human Rhinovirus Genotyping Protocol. J Clin Med 2023 Alsayed AR;Abed A;Abu-Samak M;Alshammari F;Alshammari B View More
37417335 Inhibitory Neurons in Nucleus Tractus Solitarius Are Involved in Decrease of Heart Rate Variability and Development of Depression-Like Behaviors in Temporal Lobe Epilepsy. Int J Neuropsychopharmacol 2023 Aimaier G;Qian K;Cao H;Peng W;Zhang Z;Ma J;Ding J;Wang X View More
37515294 Rhinovirus Genotypes Circulating in Bulgaria, 2018-2021. Viruses 2023 Georgieva I;Stoyanova A;Angelova S;Korsun N;Stoitsova S;Nikolaeva-Glomb L View More
37630611 Aetiology of Community-Acquired Pneumonia and the Role of Genetic Host Factors in Hospitalized Patients in Cyprus. Microorganisms 2023 Ladas P;Porfyridis I;Tryfonos C;Ioannou A;Adamide T;Christodoulou C;Richter J View More
37676707 Evaluation of sequence hybridization for respiratory viruses using the Twist Bioscience Respiratory Virus Research panel and the OneCodex Respiratory Virus sequence analysis workflow. Microb Genom 2023 Kapel N;Kalimeris E;Lumley S;Decano A;Rodger G;Lopes Alves M;Dingle K;Oakley S;Barrett L;Barnett S;Crook D;Eyre DW;Matthews PC;Street T;Stoesser N View More
37796012 Full genome sequence of a human rhinovirus A1B, obtained in Kazakhstan. Microbiol Resour Announc 2023 Strochkov V;Beloussov V;Solomadin M;Granica J;Yegorov S;Orkara S;Sandybayev N View More