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Characterization of the nasopharyngeal microbiota in health and during rhinovirus challenge. |
Microbiome |
2014 |
Allen EK;Koeppel AF;Hendley JO;Turner SD;Winther B;Sale MM |
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25286177
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Sequencing human rhinoviruses: direct sequencing versus plasmid cloning. |
J Virol Methods |
2015 |
Linder JE;Plachco TE;Libster R;Miller EK |
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25354781
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Association mapping of disease resistance traits in rainbow trout using restriction site associated DNA sequencing. |
G3 (Bethesda) |
2014 |
Campbell NR;LaPatra SE;Overturf K;Towner R;Narum SR |
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25542461
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The emergence of enterovirus D68 in a Dutch University Medical Center and the necessity for routinely screening for respiratory viruses. |
J Clin Virol |
2015 |
Poelman R;Scholvinck EH;Borger R;Niesters HG;van Leer-Buter C |
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25556759
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Human rhinovirus serotypes in the nasal washes and mucosa of patients with chronic rhinosinusitis. |
Int Forum Allergy Rhinol |
2015 |
Lee SB;Yi JS;Lee BJ;Gong CH;Kim NH;Joo CH;Jang YJ |
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25866327
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Direct multiplexed whole genome sequencing of respiratory tract samples reveals full viral genomic information. |
J Clin Virol |
2015 |
Zoll J;Rahamat-Langendoen J;Ahout I;de Jonge MI;Jans J;Huijnen MA;Ferwerda G;Warris A;Melchers WJ |
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25972105
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Coexistence of two clades of enterovirus D68 in pediatric Swedish patients in the summer and fall of 2014. |
Infect Dis (Lond) |
2015 |
Dyrdak R;Rotzen-Ostlund M;Samuelson A;Eriksson M;Albert J |
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26231254
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Unbiased metagenomic sequencing complements specific routine diagnostic methods and increases chances to detect rare viral strains. |
Diagn Microbiol Infect Dis |
2015 |
Lewandowska DW;Zagordi O;Zbinden A;Schuurmans MM;Schreiber P;Geissberger FD;Huder JB;Boni J;Benden C;Mueller NJ;Trkola A;Huber M |
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27232888
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Rhinovirus species and clinical characteristics in the first wheezing episode in children. |
J Med Virol |
2016 |
Turunen R;Jartti T;Bochkov YA;Gern JE;Vuorinen T |
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27822536
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A Universal Next-Generation Sequencing Protocol To Generate Noninfectious Barcoded cDNA Libraries from High-Containment RNA Viruses. |
mSystems |
2016 |
Moser LA;Ramirez-Carvajal L;Puri V;Pauszek SJ;Matthews K;Dilley KA;Mullan C;McGraw J;Khayat M;Beeri K;Yee A;Dugan V;Heise MT;Frieman MB;Rodriguez LL;Bernard KA;Wentworth DE;Stockwell TB;Shabman RS |
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27921234
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Simultaneous virus identification and characterization of severe unexplained pneumonia cases using a metagenomics sequencing technique. |
Sci China Life Sci |
2017 |
Zou X;Tang G;Zhao X;Huang Y;Chen T;Lei M;Chen W;Yang L;Zhu W;Zhuang L;Yang J;Feng Z;Wang D;Wang D;Shu Y |
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28165146
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Enterovirus D68 detection in respiratory specimens: Association with severe disease. |
J Med Virol |
2017 |
Engelmann I;Fatoux M;Lazrek M;Alidjinou EK;Mirand A;Henquell C;Dewilde A;Hober D |
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28331089
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Diversity, Distribution, and Evolution of Tomato Viruses in China Uncovered by Small RNA Sequencing. |
J Virol |
2017 |
Xu C;Sun X;Taylor A;Jiao C;Xu Y;Cai X;Wang X;Ge C;Pan G;Wang Q;Fei Z;Wang Q |
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28368491
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Viral Pathogen Detection by Metagenomics and Pan-Viral Group Polymerase Chain Reaction in Children With Pneumonia Lacking Identifiable Etiology. |
J Infect Dis |
2017 |
Schlaberg R;Queen K;Simmon K;Tardif K;Stockmann C;Flygare S;Kennedy B;Voelkerding K;Bramley A;Zhang J;Eilbeck K;Yandell M;Jain S;Pavia AT;Tong S;Ampofo K |
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28379561
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Rule-Out Outbreak: 24-Hour Metagenomic Next-Generation Sequencing for Characterizing Respiratory Virus Source for Infection Prevention. |
J Pediatric Infect Dis Soc |
2017 |
Greninger AL;Waghmare A;Adler A;Qin X;Crowley JL;Englund JA;Kuypers JM;Jerome KR;Zerr DM |
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28630939
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Retrospective Surveillance of Wastewater To Examine Seasonal Dynamics of Enterovirus Infections. |
mSphere |
2017 |
Brinkman NE;Fout GS;Keely SP |
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28779659
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Retrospective use of next-generation sequencing reveals the presence of Enteroviruses in acute influenza-like illness respiratory samples collected in South/South-East Asia during 2010-2013. |
J Clin Virol |
2017 |
Rutvisuttinunt W;Klungthong C;Thaisomboonsuk B;Chinnawirotpisan P;Ajariyakhajorn C;Manasatienkij W;Phonpakobsin T;Lon C;Saunders D;Wangchuk S;Shrestha SK;Velasco JMS;Alera MTP;Simasathien S;Buddhari D;Jarman RG;Macareo LR;Yoon IK;Fernandez S |
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28852711
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Enterovirus D68 in Viet Nam (2009-2015). |
Wellcome Open Res |
2017 |
Ny NTH;Anh NT;Hang VTT;Nguyet LA;Thanh TT;Ha DQ;Minh NNQ;Ha DLA;McBride A;Tuan HM;Baker S;Tam PTT;Phuc TM;Huong DT;Loi TQ;Vu NTA;Hung NV;Minh TTT;Xang NV;Dong N;Nghia HDT;Chau NVV;Thwaites G;van Doorn HR;Anscombe C;Le Van T |
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30323802
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Whole Genome Sequencing of Enteroviruses Species A to D by High-Throughput Sequencing: Application for Viral Mixtures. |
Front Microbiol |
2018 |
Joffret ML;Polston PM;Razafindratsimandresy R;Bessaud M;Heraud JM;Delpeyroux F |
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31189707
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Effect of Geographic Isolation on the Nasal Virome of Indigenous Children. |
J Virol |
2019 |
Altan E;Dib JC;Gulloso AR;Escribano Juandigua D;Deng X;Bruhn R;Hildebrand K;Freiden P;Yamamoto J;Schultz-Cherry S;Delwart E |
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31217053
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Next-generation Sequencing Study of Pathogens in Serum from Patients with Febrile Jaundice in Sierra Leone. |
Biomed Environ Sci |
2019 |
Zhang Y;Ye F;Xia LX;Zhu LW;Kamara IL;Huang KQ;Zhang Y;Liu J;Kargbo B;Wang J;Liang MF;Song JD;Ma XJ;Wu GZ |
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31623340
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An Emerging Human Parechovirus Type 5 Causing Sepsis-Like Illness in Infants in Australia. |
Viruses |
2019 |
Chamings A;Liew KC;Reid E;Athan E;Raditsis A;Vuillermin P;Yoga Y;Caly L;Druce J;Alexandersen S |
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31882450
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A rapid and label-free platform for virus capture and identification from clinical samples. |
Proc Natl Acad Sci U S A |
2020 |
Yeh YT;Gulino K;Zhang Y;Sabestien A;Chou TW;Zhou B;Lin Z;Albert I;Lu H;Swaminathan V;Ghedin E;Terrones M |
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31921732
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Identification of Viral Signatures Using High-Throughput Sequencing on Blood of Patients With Kawasaki Disease. |
Front Pediatr |
2019 |
L'Huillier AG;Brito F;Wagner N;Cordey S;Zdobnov E;Posfay-Barbe KM;Kaiser L |
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31996093
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Discovery of a subgenotype of human coronavirus NL63 associated with severe lower respiratory tract infection in China, 2018. |
Emerg Microbes Infect |
2020 |
Wang Y;Li X;Liu W;Gan M;Zhang L;Wang J;Zhang Z;Zhu A;Li F;Sun J;Zhang G;Zhuang Z;Luo J;Chen D;Qiu S;Zhang L;Xu D;Mok CKP;Zhang F;Zhao J;Zhou R;Zhao J |
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32493783
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Biennial Upsurge and Molecular Epidemiology of Enterovirus D68 Infection in New York, USA, 2014 to 2018. |
J Clin Microbiol |
2020 |
Gilrane VL;Zhuge J;Huang W;Nolan SM;Dhand A;Yin C;Salib C;Shakil F;Engel H;Fallon JT;Wang G |
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32496715
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[Etiology of epidemic outbreaks COVID-19 on Wuhan, Hubei province, Chinese People Republic associated with 2019-nCoV (Nidovirales, Coronaviridae, Coronavirinae, Betacoronavirus, Subgenus Sarbecovirus): lessons of SARS-CoV outbreak.]. |
Vopr Virusol |
2020 |
Lvov DK;Alkhovsky SV;Kolobukhina LV;Burtseva EI |
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32499763
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Epidemiology and Phylogenetic Analysis of Viral Respiratory Infections in Vietnam. |
Front Microbiol |
2020 |
Lu L;Robertson G;Ashworth J;Pham Hong A;Shi T;Ivens A;Thwaites G;Baker S;Woolhouse M |
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32499788
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Airway Epithelial Cell Immunity Is Delayed During Rhinovirus Infection in Asthma and COPD. |
Front Immunol |
2020 |
Veerati PC;Troy NM;Reid AT;Li NF;Nichol KS;Kaur P;Maltby S;Wark PAB;Knight DA;Bosco A;Grainge CL;Bartlett NW |
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33170499
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Etiology of Severe Community-Acquired Pneumonia in Adults Based on Metagenomic Next-Generation Sequencing: A Prospective Multicenter Study. |
Infect Dis Ther |
2020 |
Wu X;Li Y;Zhang M;Li M;Zhang R;Lu X;Gao W;Li Q;Xia Y;Pan P;Li Q |
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33281758
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Broad Virus Detection and Variant Discovery in Fecal Samples of Hematopoietic Transplant Recipients Using Targeted Sequence Capture Metagenomics. |
Front Microbiol |
2020 |
Jansen SA;Nijhuis W;Leavis HL;Riezebos-Brilman A;Lindemans CA;Schuurman R |
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33918088
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Detection and Typing of Human Enteroviruses from Clinical Samples by Entire-Capsid Next Generation Sequencing. |
Viruses |
2021 |
Majumdar M;Celma C;Pegg E;Polra K;Dunning J;Martin J |
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33929935
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Blood virosphere in febrile Tanzanian children. |
Emerg Microbes Infect |
2021 |
Cordey S;Laubscher F;Hartley MA;Junier T;Keitel K;Docquier M;Guex N;Iseli C;Vieille G;Le Mercier P;Gleizes A;Samaka J;Mlaganile T;Kagoro F;Masimba J;Said Z;Temba H;Elbanna GH;Tapparel C;Zanella MC;Xenarios I;Fellay J;D'Acremont V;Kaiser L |
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34522789
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Whole genome sequencing of two human rhinovirus A types (A101 and A15) detected in Kenya, 2016-2018. |
Wellcome Open Res |
2021 |
Luka MM;Kamau E;de Laurent ZR;Morobe JM;Alii LK;Nokes DJ;Agoti CN |
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34546782
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First Report of Bean common mosaic virus Infecting Heavenly Bamboo (Nandina domestica) in China. |
Plant Dis |
2022 |
Su X;Zhou X;Li Y;Ma L;Cheng X;Guo K |
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34787455
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Temporal and Gene Reassortment Analysis of Influenza C Virus Outbreaks in Hong Kong, SAR, China. |
J Virol |
2022 |
Daniels RS;Galiano M;Ermetal B;Kwong J;Lau CS;Xiang Z;McCauley JW;Lo J |
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35033134
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Cold case: The disappearance of Egypt bee virus, a fourth distinct master strain of deformed wing virus linked to honeybee mortality in 1970\'s Egypt. |
Virol J |
2022 |
de Miranda JR;Brettell LE;Chejanovsky N;Childers AK;Dalmon A;Deboutte W;de Graaf DC;Doublet V;Gebremedhn H;Genersch E;Gisder S;Granberg F;Haddad NJ;Kaden R;Manley R;Matthijnssens J;Meeus I;Migdadi H;Milbrath MO;Mondet F;Remnant EJ;Roberts JMK;Ryabov EV;Sela N;Smagghe G;Somanathan H;Wilfert L;Wright ON;Martin SJ;Ball BV |
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35367470
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Epithelial cell responses to rhinovirus identify an early-life-onset asthma phenotype in adults. |
J Allergy Clin Immunol |
2022 |
Chang EH;Pouladi N;Guerra S;Jandova J;Kim A;Li H;Li J;Morgan W;Stern DA;Willis AL;Lussier YA;Martinez FD |
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35695488
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Evaluation of Metagenomic and Targeted Next-Generation Sequencing Workflows for Detection of Respiratory Pathogens from Bronchoalveolar Lavage Fluid Specimens. |
J Clin Microbiol |
2022 |
Gaston DC;Miller HB;Fissel JA;Jacobs E;Gough E;Wu J;Klein EY;Carroll KC;Simner PJ |
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36168937
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Surveillance of rhinovirus diversity among a university community identifies multiple types from all three species including an unassigned rhinovirus A genotype. |
Influenza Other Respir Viruses |
2022 |
Faleye TOC;Elyaderani A;Skidmore P;Adhikari S;Smith A;Kaiser N;Sandrolini H;Finnerty S;Halden RU;Varsani A;Scotch M |
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36203558
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Impact of sample clarification by size exclusion on virus detection and diversity in wastewater-based epidemiology. |
medRxiv |
2022 |
Faleye TOC;Skidmore P;Elyaderani A;Adhikari S;Kaiser N;Smith A;Yanez A;Perleberg T;Driver EM;Halden RU;Varsani A;Scotch M |
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36389175
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Diagnostic value of bronchoalveolar lavage fluid metagenomic next-generation sequencing in pediatric pneumonia. |
Front Cell Infect Microbiol |
2022 |
Deng W;Xu H;Wu Y;Li J |
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36494960
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GENETIC DIVERSITY OF ADENOVIRUSES CIRCULATING AMONG THE MILITARY IN THE NORTH-WEST REGION. |
Vopr Virusol |
2017 |
Amosova IV;Timoshicheva TA;Egorova AA;Musaeva TD;Pisareva MM;Eder VA;Lvov NI |
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36508145
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Full genome sequence of a novel iflavirus from the aster leafhopper Macrosteles fascifrons. |
Virus Genes |
2023 |
Xiao J;Zhu K;Ma R;Zhang C;Lv K;Ge D;Liu R |
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36805803
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Clinical Evaluation of Metagenomic Next-Generation Sequencing for the detection of pathogens in BALF in severe community acquired pneumonia. |
Ital J Pediatr |
2023 |
Wei Y;Zhang T;Ma Y;Yan J;Zhan J;Zheng J;Xu Y |
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37373604
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Etiologies of Acute Bronchiolitis in Children at Risk for Asthma, with Emphasis on the Human Rhinovirus Genotyping Protocol. |
J Clin Med |
2023 |
Alsayed AR;Abed A;Abu-Samak M;Alshammari F;Alshammari B |
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37417335
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Inhibitory Neurons in Nucleus Tractus Solitarius Are Involved in Decrease of Heart Rate Variability and Development of Depression-Like Behaviors in Temporal Lobe Epilepsy. |
Int J Neuropsychopharmacol |
2023 |
Aimaier G;Qian K;Cao H;Peng W;Zhang Z;Ma J;Ding J;Wang X |
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37515294
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Rhinovirus Genotypes Circulating in Bulgaria, 2018-2021. |
Viruses |
2023 |
Georgieva I;Stoyanova A;Angelova S;Korsun N;Stoitsova S;Nikolaeva-Glomb L |
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37630611
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Aetiology of Community-Acquired Pneumonia and the Role of Genetic Host Factors in Hospitalized Patients in Cyprus. |
Microorganisms |
2023 |
Ladas P;Porfyridis I;Tryfonos C;Ioannou A;Adamide T;Christodoulou C;Richter J |
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37676707
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Evaluation of sequence hybridization for respiratory viruses using the Twist Bioscience Respiratory Virus Research panel and the OneCodex Respiratory Virus sequence analysis workflow. |
Microb Genom |
2023 |
Kapel N;Kalimeris E;Lumley S;Decano A;Rodger G;Lopes Alves M;Dingle K;Oakley S;Barrett L;Barnett S;Crook D;Eyre DW;Matthews PC;Street T;Stoesser N |
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37796012
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Full genome sequence of a human rhinovirus A1B, obtained in Kazakhstan. |
Microbiol Resour Announc |
2023 |
Strochkov V;Beloussov V;Solomadin M;Granica J;Yegorov S;Orkara S;Sandybayev N |
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