| RVdb StrainID | CNZ04611 | GenBank Accession | JX074056.1 |
| Species | RVC | Sequence Length | 6934 nt |
| Serotype | 43 Checked by RVdb | Serotype (GenBank) | 43 |
| Definition | Human rhinovirus C strain HRV-C43_p1154_sR1124_2009 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C43_p1154_sR1124_2009 | Sampling Date | 2009 |
| Sampling Country | USA | Sampling location | Wisconsin |
| Isolation Source | -N/A- | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC021308 | 1A (VP4) | 493 | 693 | 0 | 0 | 201 | |
| SQC021309 | 1B (VP2) | 694 | 1482 | 0 | 0 | 789 | |
| SQC021310 | 1C (VP3) | 1483 | 2181 | 0 | 0 | 699 | |
| SQC021311 | 1D (VP1) | 2182 | 2997 | 0 | 0 | 816 | |
| SQC021312 | 2A (P2-A) | 2998 | 3423 | 0 | 0 | 426 | |
| SQC021313 | 2B (P2-B) | 3424 | 3714 | 0 | 0 | 291 | |
| SQC021314 | 2C (P2-C) | 3715 | 4689 | 0 | 0 | 975 | |
| SQC021315 | 3A (P3-A) | 4690 | 4917 | 0 | 0 | 228 | |
| SQC021316 | 3B (VPg) | 4918 | 4983 | 0 | 0 | 66 | |
| SQC021317 | 3D | 5533 | 6912 | 0 | 0 | 1380 | |
| SQC021318 | 5'UTR | 0 | 492 | 1 | 0 | 492 | |
| SQC021319 | CDS | 493 | 6915 | 0 | 0 | 6423 | |
| SQC021320 | protease 3C | 4984 | 5532 | 0 | 0 | 549 | |
| SQC021321 | VP4/2 | 493 | 923 | 0 | 0 | 431 | |
| SQC021322 | genome | 1 | 6934 | 1 | 1 | 6934 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC003370 | CDS | 1 | 2140 | 0 | 0 | 2140 | |
| SPC003371 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC003372 | 3D | 1681 | 2140 | 0 | 0 | 460 | |
| SPC003373 | 2C (P2-C) | 1075 | 1399 | 0 | 0 | 325 | |
| SPC003374 | 1D (VP1) | 564 | 835 | 0 | 0 | 272 | |
| SPC003375 | 1B (VP2) | 68 | 330 | 0 | 0 | 263 | |
| SPC003376 | 1C (VP3) | 331 | 563 | 0 | 0 | 233 | |
| SPC003377 | protease 3C | 1498 | 1680 | 0 | 0 | 183 | |
| SPC003378 | 2A (P2-A) | 836 | 977 | 0 | 0 | 142 | |
| SPC003379 | 2B (P2-B) | 978 | 1074 | 0 | 0 | 97 | |
| SPC003380 | 3A (P3-A) | 1400 | 1475 | 0 | 0 | 76 | |
| SPC003381 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC003382 | 3B (VPg) | 1476 | 1497 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |