| RVdb StrainID | CNC04764 | GenBank Accession | JN798581.1 |
| Species | RVC | Sequence Length | 6962 nt |
| Serotype | 32 Checked by RVdb | Serotype (GenBank) | 32 |
| Definition | Human rhinovirus C strain HRV-C32_p1167_sR2910_2008 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C32_p1167_sR2910_2008 | Sampling Date | 2008-09-14 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC003407 | 1A (VP4) | 580 | 780 | 0 | 0 | 201 | |
| SQC003408 | 1B (VP2) | 781 | 1569 | 0 | 0 | 789 | |
| SQC003409 | 1C (VP3) | 1570 | 2268 | 0 | 0 | 699 | |
| SQC003410 | 1D (VP1) | 2269 | 3087 | 0 | 0 | 819 | |
| SQC003411 | 2A (P2-A) | 3088 | 3513 | 0 | 0 | 426 | |
| SQC003412 | 2B (P2-B) | 3514 | 3807 | 0 | 0 | 294 | |
| SQC003413 | 2C (P2-C) | 3808 | 4782 | 0 | 0 | 975 | |
| SQC003414 | 3A (P3-A) | 4783 | 5010 | 0 | 0 | 228 | |
| SQC003415 | 3B (VPg) | 5011 | 5076 | 0 | 0 | 66 | |
| SQC003416 | 3D | 5626 | 0 | 0 | 1 | 1337 | |
| SQC003417 | 5'UTR | 0 | 579 | 1 | 0 | 579 | |
| SQC003418 | CDS | 580 | 0 | 0 | 1 | 6383 | |
| SQC003419 | protease 3C | 5077 | 5625 | 0 | 0 | 549 | |
| SQC003420 | VP4/2 | 580 | 1010 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002532 | CDS | 1 | 2128 | 0 | 0 | 2128 | |
| SPC002533 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002534 | 3D | 1683 | 2128 | 0 | 1 | 446 | |
| SPC002535 | 2C (P2-C) | 1077 | 1401 | 0 | 0 | 325 | |
| SPC002536 | 1D (VP1) | 564 | 836 | 0 | 0 | 273 | |
| SPC002537 | 1B (VP2) | 68 | 330 | 0 | 0 | 263 | |
| SPC002538 | 1C (VP3) | 331 | 563 | 0 | 0 | 233 | |
| SPC002539 | protease 3C | 1500 | 1682 | 0 | 0 | 183 | |
| SPC002540 | 2A (P2-A) | 837 | 978 | 0 | 0 | 142 | |
| SPC002541 | 2B (P2-B) | 979 | 1076 | 0 | 0 | 98 | |
| SPC002542 | 3A (P3-A) | 1402 | 1477 | 0 | 0 | 76 | |
| SPC002543 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002544 | 3B (VPg) | 1478 | 1499 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |