| RVdb StrainID | CNC04614 | GenBank Accession | JQ994500.1 |
| Species | RVC | Sequence Length | 6807 nt |
| Serotype | 42 Checked by RVdb | Serotype (GenBank) | 42 |
| Definition | Human rhinovirus C strain HRV-C42_p1053_s3040_1999 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C42_p1053_s3040_1999 | Sampling Date | 1999 |
| Sampling Country | USA | Sampling location | -N/A- |
| Isolation Source | -N/A- | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.06 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC003305 | 1A (VP4) | 645 | 845 | 0 | 0 | 201 | |
| SQC003306 | 1B (VP2) | 846 | 1640 | 0 | 0 | 795 | |
| SQC003307 | 1C (VP3) | 1641 | 2351 | 0 | 0 | 711 | |
| SQC003308 | 1D (VP1) | 2352 | 3179 | 0 | 0 | 828 | |
| SQC003309 | 2A (P2-A) | 3180 | 3605 | 0 | 0 | 426 | |
| SQC003310 | 2B (P2-B) | 3606 | 3902 | 0 | 0 | 297 | |
| SQC003311 | 2C (P2-C) | 3903 | 4880 | 0 | 0 | 978 | |
| SQC003312 | 3'UTR | 6735 | 0 | 0 | 1 | 41 | |
| SQC003313 | 3A (P3-A) | 4881 | 5105 | 0 | 0 | 225 | |
| SQC003314 | 3B (VPg) | 5106 | 5171 | 0 | 0 | 66 | |
| SQC003315 | 3D | 5721 | 0 | 0 | 1 | 1087 | |
| SQC003316 | 5'UTR | 27 | 644 | 0 | 0 | 618 | |
| SQC003317 | CDS | 645 | 0 | 0 | 1 | 6163 | |
| SQC003318 | protease 3C | 5172 | 5720 | 0 | 0 | 549 | |
| SQC003319 | VP4/2 | 645 | 1075 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC003331 | CDS | 1 | 2054 | 0 | 0 | 2054 | |
| SPC003332 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC003333 | 3D | 1693 | 2054 | 0 | 1 | 362 | |
| SPC003334 | 2C (P2-C) | 1087 | 1412 | 0 | 0 | 326 | |
| SPC003335 | 1D (VP1) | 570 | 845 | 0 | 0 | 276 | |
| SPC003336 | 1B (VP2) | 68 | 332 | 0 | 0 | 265 | |
| SPC003337 | 1C (VP3) | 333 | 569 | 0 | 0 | 237 | |
| SPC003338 | protease 3C | 1510 | 1692 | 0 | 0 | 183 | |
| SPC003339 | 2A (P2-A) | 846 | 987 | 0 | 0 | 142 | |
| SPC003340 | 2B (P2-B) | 988 | 1086 | 0 | 0 | 99 | |
| SPC003341 | 3A (P3-A) | 1413 | 1487 | 0 | 0 | 75 | |
| SPC003342 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC003343 | 3B (VPg) | 1488 | 1509 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675858 | Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |