| RVdb StrainID | CNC00004 | GenBank Accession | ON989190.1 |
| Species | RVC | Sequence Length | 2726 nt |
| Serotype | 17 Checked by RVdb | Serotype (GenBank) | 17 |
| Definition | Rhinovirus C strain RV-C17-USA-Feb-2021-Tempe-AZ polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | RV-C17-USA-Feb-2021-Tempe-AZ | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | a university clinic in the Southwest United States |
| Isolation Source | influenza-like Illness | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | MEGAHIT v. 1.2.9. |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC000001 | 1A (VP4) | 92 | 292 | 0 | 0 | 201 | |
| SQC000002 | 1B (VP2) | 293 | 1081 | 0 | 0 | 789 | |
| SQC000003 | 1C (VP3) | 1082 | 1795 | 0 | 0 | 714 | |
| SQC000004 | 1D (VP1) | 1796 | 2614 | 0 | 0 | 819 | |
| SQC000005 | CDS | 92 | 0 | 0 | 1 | 2635 | |
| SQC000006 | VP4/2 | 92 | 522 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC018559 | CDS | 1 | 878 | 0 | 1 | 878 | |
| SPC018560 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC018561 | 1D (VP1) | 567 | 847 | 0 | 0 | 281 | |
| SPC018562 | 1B (VP2) | 68 | 330 | 0 | 0 | 263 | |
| SPC018563 | 1C (VP3) | 331 | 566 | 0 | 0 | 236 | |
| SPC018564 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 36168937 | Surveillance of rhinovirus diversity among a university community identifies multiple types from all three species including an unassigned rhinovirus A genotype. | 2022 | Influenza Other Respir Viruses | View More |