| RVdb StrainID | ANZ07226 | GenBank Accession | JN562720.1 |
| Species | RVA | Sequence Length | 6717 nt |
| Serotype | 34 Checked by RVdb | Serotype (GenBank) | 34 |
| Definition | Human rhinovirus A strain HRV-A34_p1001_sR2_2008 polyprotein gene, complete cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A34_p1001_sR2_2008 | Sampling Date | 2008-12-04 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA037779 | 1A (VP4) | 198 | 404 | 0 | 0 | 207 | |
| SQA037780 | 1B (VP2) | 405 | 1181 | 0 | 0 | 777 | |
| SQA037781 | 1C (VP3) | 1182 | 1895 | 0 | 0 | 714 | |
| SQA037782 | 1D (VP1) | 1896 | 2756 | 0 | 0 | 861 | |
| SQA037783 | 2A (P2-A) | 2757 | 3182 | 0 | 0 | 426 | |
| SQA037784 | 2B (P2-B) | 3183 | 3467 | 0 | 0 | 285 | |
| SQA037785 | 2C (P2-C) | 3468 | 4433 | 0 | 0 | 966 | |
| SQA037786 | 3A (P3-A) | 4434 | 4664 | 0 | 0 | 231 | |
| SQA037787 | 3B (VPg) | 4665 | 4727 | 0 | 0 | 63 | |
| SQA037788 | protease 3C | 4728 | 5276 | 0 | 0 | 549 | |
| SQA037789 | 3D | 5277 | 6656 | 0 | 0 | 1380 | |
| SQA037790 | CDS | 198 | 6659 | 0 | 0 | 6462 | |
| SQA037791 | VP4/2 | 198 | 632 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003432 | protease 3C | 1511 | 1693 | 0 | 0 | 183 | |
| SPA003433 | 3D | 1694 | 2153 | 0 | 0 | 460 | |
| SPA003434 | 3B (VPg) | 1490 | 1510 | 0 | 0 | 21 | |
| SPA003435 | 3A (P3-A) | 1413 | 1489 | 0 | 0 | 77 | |
| SPA003436 | 2C (P2-C) | 1091 | 1412 | 0 | 0 | 322 | |
| SPA003437 | 2B (P2-B) | 996 | 1090 | 0 | 0 | 95 | |
| SPA003438 | 2A (P2-A) | 854 | 995 | 0 | 0 | 142 | |
| SPA003439 | 1D (VP1) | 567 | 853 | 0 | 0 | 287 | |
| SPA003440 | 1C (VP3) | 329 | 566 | 0 | 0 | 238 | |
| SPA003441 | 1B (VP2) | 70 | 328 | 0 | 0 | 259 | |
| SPA003442 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003443 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003444 | CDS | 1 | 2153 | 0 | 0 | 2153 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |