| RVdb StrainID | ANZ06811 | GenBank Accession | JQ837718.1 |
| Species | RVA | Sequence Length | 7007 nt |
| Serotype | 55 Checked by RVdb | Serotype (GenBank) | 55 |
| Definition | Human rhinovirus A strain HRV-A55_p1275_s6474_2000 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A55_p1275_s6474_2000 | Sampling Date | 2000 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | -N/A- | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.2.01 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA037409 | 1A (VP4) | 553 | 759 | 0 | 0 | 207 | |
| SQA037410 | 1B (VP2) | 760 | 1545 | 0 | 0 | 786 | |
| SQA037411 | 1C (VP3) | 1546 | 2259 | 0 | 0 | 714 | |
| SQA037412 | 1D (VP1) | 2260 | 3120 | 0 | 0 | 861 | |
| SQA037413 | 2A (P2-A) | 3121 | 3546 | 0 | 0 | 426 | |
| SQA037414 | 2B (P2-B) | 3547 | 3831 | 0 | 0 | 285 | |
| SQA037415 | 2C (P2-C) | 3832 | 4797 | 0 | 0 | 966 | |
| SQA037416 | 3A (P3-A) | 4798 | 5028 | 0 | 0 | 231 | |
| SQA037417 | 3B (VPg) | 5029 | 5091 | 0 | 0 | 63 | |
| SQA037418 | protease 3C | 5092 | 5640 | 0 | 0 | 549 | |
| SQA037419 | 3D | 5641 | 7007 | 0 | 1 | 1367 | |
| SQA037420 | 5'UTR | 1 | 552 | 1 | 0 | 552 | |
| SQA037421 | CDS | 553 | 7007 | 0 | 1 | 6455 | |
| SQA037422 | VP4/2 | 553 | 987 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA004948 | protease 3C | 1514 | 1696 | 0 | 0 | 183 | |
| SPA004949 | 3D | 1697 | 2151 | 0 | 1 | 455 | |
| SPA004950 | 3B (VPg) | 1493 | 1513 | 0 | 0 | 21 | |
| SPA004951 | 3A (P3-A) | 1416 | 1492 | 0 | 0 | 77 | |
| SPA004952 | 2C (P2-C) | 1094 | 1415 | 0 | 0 | 322 | |
| SPA004953 | 2B (P2-B) | 999 | 1093 | 0 | 0 | 95 | |
| SPA004954 | 2A (P2-A) | 857 | 998 | 0 | 0 | 142 | |
| SPA004955 | 1D (VP1) | 570 | 856 | 0 | 0 | 287 | |
| SPA004956 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA004957 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA004958 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA004959 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA004960 | CDS | 1 | 2151 | 0 | 0 | 2151 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |