| RVdb StrainID | ANM07175 | GenBank Accession | JN798557.1 |
| Species | RVA | Sequence Length | 6977 nt |
| Serotype | 30 Checked by RVdb | Serotype (GenBank) | 30 |
| Definition | Human rhinovirus A strain HRV-A30_p1119_sR2031_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A30_p1119_sR2031_2009 | Sampling Date | 2009-09-26 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet v. 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA014232 | 1A (VP4) | 541 | 720 | 0 | 1 | 180 | |
| SQA014233 | 1B (VP2) | 745 | 1530 | 0 | 0 | 786 | |
| SQA014234 | 1C (VP3) | 1531 | 2241 | 0 | 0 | 711 | |
| SQA014235 | 1D (VP1) | 2242 | 3090 | 0 | 0 | 849 | |
| SQA014236 | 2A (P2-A) | 3091 | 3516 | 0 | 0 | 426 | |
| SQA014237 | 2B (P2-B) | 3517 | 3801 | 0 | 0 | 285 | |
| SQA014238 | 2C (P2-C) | 3802 | 4767 | 0 | 0 | 966 | |
| SQA014239 | 3A (P3-A) | 4768 | 4998 | 0 | 0 | 231 | |
| SQA014240 | 3B (VPg) | 4999 | 5061 | 0 | 0 | 63 | |
| SQA014241 | protease 3C | 5062 | 5610 | 0 | 0 | 549 | |
| SQA014242 | 3D | 5611 | 6977 | 0 | 1 | 1367 | |
| SQA014243 | 5'UTR | 1 | 540 | 1 | 0 | 540 | |
| SQA014244 | CDS | 541 | 6977 | 0 | 1 | 6437 | |
| SQA014245 | VP4/2 | 541 | 975 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003614 | protease 3C | 1508 | 1690 | 0 | 0 | 183 | |
| SPA003615 | 3D | 1691 | 2146 | 0 | 1 | 456 | |
| SPA003616 | 3B (VPg) | 1487 | 1507 | 0 | 0 | 21 | |
| SPA003617 | 3A (P3-A) | 1410 | 1486 | 0 | 0 | 77 | |
| SPA003618 | 2C (P2-C) | 1088 | 1409 | 0 | 0 | 322 | |
| SPA003619 | 2B (P2-B) | 993 | 1087 | 0 | 0 | 95 | |
| SPA003620 | 2A (P2-A) | 851 | 992 | 0 | 0 | 142 | |
| SPA003621 | 1D (VP1) | 568 | 850 | 0 | 0 | 283 | |
| SPA003622 | 1C (VP3) | 331 | 567 | 0 | 0 | 237 | |
| SPA003623 | 1B (VP2) | 69 | 330 | 0 | 0 | 262 | |
| SPA003624 | 1A (VP4) | 1 | 60 | 0 | 1 | 60 | |
| SPA003625 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003626 | CDS | 1 | 2146 | 0 | 0 | 2146 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |