| RVdb StrainID | ANC07139 | GenBank Accession | JN837694.1 |
| Species | RVA | Sequence Length | 6919 nt |
| Serotype | 1 Checked by RVdb | Serotype (GenBank) | 1 |
| Definition | Human rhinovirus A strain HRV-A01_p1171_sR1211_2009 polyprotein gene, partial cds | GenBank Submission Date | 2017-01-25 |
| Strain Name | HRV-A01_p1171_sR1211_2009 | Sampling Date | 2009-09-19 |
| Sampling Country | USA | Sampling location | Madison, WI |
| Isolation Source | oronasal secretion [ENVO:02000035] | NCBI Taxon ID | 147711 |
| Sequencing Technology | Illumina | Assembly Method | Velvet 1.1.04 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA006283 | 1A (VP4) | 449 | 655 | 0 | 0 | 207 | |
| SQA006284 | 1B (VP2) | 656 | 1444 | 0 | 0 | 789 | |
| SQA006285 | 1C (VP3) | 1445 | 2158 | 0 | 0 | 714 | |
| SQA006286 | 1D (VP1) | 2159 | 3019 | 0 | 0 | 861 | |
| SQA006287 | 2A (P2-A) | 3020 | 3445 | 0 | 0 | 426 | |
| SQA006288 | 2B (P2-B) | 3446 | 3730 | 0 | 0 | 285 | |
| SQA006289 | 2C (P2-C) | 3731 | 4696 | 0 | 0 | 966 | |
| SQA006290 | 3A (P3-A) | 4697 | 4927 | 0 | 0 | 231 | |
| SQA006291 | 3B (VPg) | 4928 | 4990 | 0 | 0 | 63 | |
| SQA006292 | protease 3C | 4991 | 5539 | 0 | 0 | 549 | |
| SQA006293 | 3D | 5540 | 6919 | 0 | 1 | 1380 | |
| SQA006294 | 5'UTR | 1 | 448 | 1 | 0 | 448 | |
| SQA006295 | CDS | 449 | 6919 | 0 | 1 | 6471 | |
| SQA006296 | VP4/2 | 449 | 883 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA003939 | protease 3C | 1515 | 1697 | 0 | 0 | 183 | |
| SPA003940 | 3D | 1698 | 2157 | 0 | 0 | 460 | |
| SPA003941 | 3B (VPg) | 1494 | 1514 | 0 | 0 | 21 | |
| SPA003942 | 3A (P3-A) | 1417 | 1493 | 0 | 0 | 77 | |
| SPA003943 | 2C (P2-C) | 1095 | 1416 | 0 | 0 | 322 | |
| SPA003944 | 2B (P2-B) | 1000 | 1094 | 0 | 0 | 95 | |
| SPA003945 | 2A (P2-A) | 858 | 999 | 0 | 0 | 142 | |
| SPA003946 | 1D (VP1) | 571 | 857 | 0 | 0 | 287 | |
| SPA003947 | 1C (VP3) | 333 | 570 | 0 | 0 | 238 | |
| SPA003948 | 1B (VP2) | 70 | 332 | 0 | 0 | 263 | |
| SPA003949 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA003950 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA003951 | CDS | 1 | 2157 | 0 | 0 | 2157 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24675855 | Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies. | 2014 | Genome Announc | View More |