| RVdb StrainID | UNS00782 | GenBank Accession | EF155421.1 |
| Species | RVA | Sequence Length | 7160 nt |
| Serotype | 102 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Human rhinovirus AMS323 polyprotein gene, complete cds | GenBank Submission Date | 2010-07-31 |
| Strain Name | AMS323 | Sampling Date | -N/A- |
| Sampling Country | Netherlands | Sampling location | Amsterdam |
| Isolation Source | patient material | NCBI Taxon ID | 433730 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQU001905 | 3'UTR | 7102 | 7142 | 0 | 0 | 41 | |
| SQU001906 | 5'UTR | 1 | 603 | 1 | 0 | 603 | |
| SQU001907 | CDS | 604 | 7101 | 0 | 0 | 6498 | |
| SQU001908 | VP4/2 | 604 | 1038 | 0 | 0 | 435 | |
| SQU001909 | 3D | 5722 | 7098 | 0 | 0 | 1377 | |
| SQU001910 | 2C (P2-C) | 3913 | 4875 | 0 | 0 | 963 | |
| SQU001911 | 1D (VP1) | 2311 | 3198 | 0 | 0 | 888 | |
| SQU001912 | 1B (VP2) | 811 | 1596 | 0 | 0 | 786 | |
| SQU001913 | 1C (VP3) | 1597 | 2310 | 0 | 0 | 714 | |
| SQU001914 | protease 3C | 5173 | 5721 | 0 | 0 | 549 | |
| SQU001915 | 2A (P2-A) | 3199 | 3627 | 0 | 0 | 429 | |
| SQU001916 | 2B (P2-B) | 3628 | 3912 | 0 | 0 | 285 | |
| SQU001917 | 3A (P3-A) | 4876 | 5109 | 0 | 0 | 234 | |
| SQU001918 | 1A (VP4) | 604 | 810 | 0 | 0 | 207 | |
| SQU001919 | 3B (VPg) | 5110 | 5172 | 0 | 0 | 63 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA033784 | CDS | 1 | 2165 | 0 | 0 | 2165 | |
| SPA033858 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA034038 | protease 3C | 1707 | 2165 | 0 | 0 | 459 | |
| SPA034039 | 2C (P2-C) | 1104 | 1424 | 0 | 0 | 321 | |
| SPA034040 | 1D (VP1) | 570 | 865 | 0 | 0 | 296 | |
| SPA034041 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA034042 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA034043 | protease 3C | 1524 | 1706 | 0 | 0 | 183 | |
| SPA034044 | 2A (P2-A) | 866 | 1008 | 0 | 0 | 143 | |
| SPA034045 | 2B (P2-B) | 1009 | 1103 | 0 | 0 | 95 | |
| SPA034046 | 3A (P3-A) | 1425 | 1502 | 0 | 0 | 78 | |
| SPA034047 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA034048 | 3B (VPg) | 1503 | 1523 | 0 | 0 | 21 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 18077635 | Human parechovirus type 1, 3, 4, 5, and 6 detection in picornavirus cultures. | 2008 | J Clin Microbiol | View More |